Brassica napus (rape): 106447552
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Entry
106447552 CDS
T04128
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106447552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106447552
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
106447552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
PRP4
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
eIF2A
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
106447552
NCBI-ProteinID:
XP_013744954
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Position
A4:complement(20306563..20309548)
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AA seq
545 aa
AA seq
DB search
MEPNNEDNVSFIPSASPAVPITQITAAPVPGVSPIPPPSFPPPMAPIPVARPPTFRPPQN
GGAKASDSDSESDDEHYVISEESKQVRERQEKAMQELLIKRRAAAIAVPTNDKSVRDRLR
RLGEPITLFGEQEMERRARLAQLMARLDIGGQLDKLLQAYEDDAAPKEEVDEEELQYPFF
TEGPKELREARIEIAKFSIKRAAVRIQRAKRRRDDPDEDVEAETKWALKQAKGLALDCSN
FGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNKIAVLKDHKERATDVVFSPVDD
CLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDINTG
AELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIKPVLSVTF
SPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVN
IWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSSNEEEEEDQGGET
MDVDL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaatgaagataatgtttcattcataccatcagcttcgcctgcagttcct
attactcaaatcacagcagctccagttccaggcgtctctcccataccacctccttctttt
cctccaccaatggctccaataccagtggcccgcccacctacttttaggccaccacaaaac
ggtggagcgaaagctagtgactcagattctgaatcagatgatgaacattatgtaatatct
gaagagagtaagcaggtcagggaaagacaagagaaggcaatgcaagagctgctgataaag
cgccgtgctgctgctatcgcagtgccaacaaacgacaaatccgttagagaccggcttaga
cgacttggtgagcccattactctgtttggagaacaggagatggagagaagagctaggctg
gctcagcttatggctaggcttgacatcggcggacagttggataaactgctacaagcttac
gaagatgacgcggctccaaaagaagaagtggacgaggaagagcttcagtacccgtttttc
actgagggtccgaaggagctgagagaggctaggatagagattgctaagttttcgattaag
agagctgctgtgaggattcagcgtgctaagcggaggagggatgatccagatgaagatgtg
gaggcagagactaaatgggctttgaagcaggctaaaggcttggctcttgattgcagtaac
tttggggatgatcgtcctctaactggctgctccttctcaagagatggaaagatacttgcc
acatgttctctgagtggagttactaaactatgggagatgcctcaagttacaaacaagatt
gctgtcttgaaggaccacaaagaacgtgcaaccgatgtagtcttctcccctgtggatgac
tgtctagcaactgcttccgctgatcgaaccgcaaagctgtggaaaaccgatggcacactc
ctacaaacttttgaaggtcatttggaccgtcttgcacgtgttgccttccacccatcaggg
aagtacctagggacaacaagcttcgacaaaacatggagactgtgggacataaacacagga
gcagagctgcttttgcaagaaggtcacagtcgcagcgtctacggaattgcgtttcagcaa
gatggtgcattagcagcttcctctgggcttgattcacttgcacgggtttgggatctccgc
actggtaggagtattctcgtcttccaaggacatatcaaaccggttctctcagtgactttc
tctccaaatggctatcacttagcatctggtggtgaggataaccagtgccgtatttgggat
ttgagaatgagaaagtcgttgtatatcataccagctcatgctaaccttgtgtctcaagtt
aagtatgaaccacaagaaggctacttcctggccactgcatcatacgacatgaaagtcaat
atatggtcaggcagagacttctcgcttgtgaaaagcttagcaggacacgagtcaaaagtc
gcttctctggatatcactgcagatagctcgtgtatcgcaactgtgtcacatgaccgtacc
atcaagctttggacaagcagtagcaacgaagaagaagaagaagaccaaggcggagaaaca
atggacgtagatctctag
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