Brassica napus (rape): 106449073
Help
Entry
106449073 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106449073
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106449073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106449073
NCBI-ProteinID:
XP_048633313
LinkDB
All DBs
Position
A4:complement(7895687..7897975)
Genome browser
AA seq
178 aa
AA seq
DB search
MMQTISFVESSRVKVKGLLSLNSQMFHIVINRCRDVKINDIRIVADGKSPNTDGIHVQLS
TDVEIRNASIKTGDDCISIGPGTKNLWVERVTCGPGHGISIGSLGKDREEEGVQNVTVKK
TVFVGTDNGLRIKSWANPSSGFVQRVRFLESLMSNVKFPLIIDQHYCPHNINCPTQVP
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagacaataagttttgtggagtcaagtagagtcaaggtgaagggattattgtca
ttgaacagccaaatgttccacatcgtcattaatcgatgccgtgatgttaagatcaacgat
attcggatcgtggcggatggaaaaagcccgaacacagatggcattcatgtccaactatca
actgatgttgaaattcgtaacgcttccatcaaaactggtgacgactgtatctccattggc
cccggaaccaagaacttgtgggtcgaacgagtcacatgtggccctggtcatggaatcagc
attgggagcttgggaaaagatagagaagaggaaggggtacaaaatgtgacggtgaagaag
acagtttttgtaggaacagacaatggattaagaattaagtcatgggctaatccatcgtcc
ggttttgttcagagggttcgattcttagagtctcttatgtccaatgtcaagtttcctctc
atcattgaccaacactattgccctcataacataaactgtcctactcaggtaccataa
DBGET
integrated database retrieval system
