Brassica napus (rape): 106449238
Help
Entry
106449238 CDS
T04128
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
bna
Brassica napus (rape)
Pathway
bna03440
Homologous recombination
bna03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106449238
03460 Fanconi anemia pathway
106449238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106449238
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106449238
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106449238
FA (Fanconi anemia) pathway
Downstream FA components
106449238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
106449238
NCBI-ProteinID:
XP_013746480
LinkDB
All DBs
Position
C9:9948864..9954619
Genome browser
AA seq
991 aa
AA seq
DB search
MVSPASLSKSEEKETLNPRNVYHIGGLQVRFPYQPYGTQLAFMSRVISTLDRAQRDGRCH
ALLESPTGTGKTLSLLCSVLAWQQSYASRFPKGNSAHKRSHFTPDVTRPPSTEPSNVVEV
EKPPRVPTIFYASRTHAQITQVIREYRKTAYRVPMAVLGARKRSCTNRRVQGKPNLDEIC
RCLIKDRNKPKCPEFIGKDDIVAHPSLQQNEVHDIEDLVKIGYAVRGCPYFAAWDMYERA
QIVFCPYSYIVDQLIRQEKLEDKLNGAIIIFDEAHNMEDIAREAGSIDLGEETLFKLQSE
LQLLSLAIPMIYQPVCDAIDGLISWIGSRKDSLAKRDPQHYFSSWTGDKALRELEESNIT
RKGFRKLSNCLIDAIERSMKEIRPHLSGIFVSTLQELLVTLGYFFSRDGSHSHTLDYELG
LQRFIKRGDSSGKWTHTLSLWCMNPSVVFKAIVDLSSSIILTSGTLSPMDSFSSELGMQF
GACLEAPHVVDANQQVWAAGIFSGPSNQPLNASYKTNDEYPFQDALGKSLEEICSIVPGG
SLVFFPSYKLMEKLCTRWRETGQWSRLRLEKDIFIEPRGGATGEFENVLKGYYDCIGGKN
RLIGRNRRAGTRVDSKKGGAFLAVCRGKVSEGLDFSDDNARAVIIVGIPFPNLHDVLVGL
KRSYNDTYKSSRNLLGGGEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYRQQRNRV
SISKWLRQSIKLYDNFEESMQDLKSFFPSAKEHVESKMLSYKEVIDLECVVQTEPETSFV
INGSSASSPFSCSSGLTLERGGPPSVSSHALKRRKFISSAAVIDLEKENNHDILTRRIEF
GSDSSTETRARVQISCLLCRSPLGHPDNNGSSYLNCLVTRSSKKYLLSLLKETSRSEMPT
SVSVIVTHCSSVDQRLCTKDEGIWCEQDGCVFNTIFCPFCSVPNTTCLGVQIMATDSSNV
HFLSKILFFSDHLNVMGDAAIKETLLEHKVT
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggtttccccagcaagcttaagcaaatcagaagagaaagaaaccctaaaccctagaaac
gtgtaccacatcggaggactccaagtgagattcccttatcagccgtacggaacacagcta
gctttcatgagccgtgtcatatctacgcttgatagagcccagagagacggtagatgccac
gcgcttctcgagtcccccactggcactggcaaaactctttcattgctctgctcggttctc
gcttggcaacagagctatgcatcgcgctttcctaaaggaaactcggctcataaaagaagt
catttcacacctgacgtcacacgaccaccctcaacagaacctagcaatgtggtggaagtc
gaaaaacctccaagagttcctaccatattctatgcttcacgaacgcatgctcagatcact
caagtcattcgtgagtatcgcaaaactgcttacagagtgcccatggctgtattgggtgca
cgtaaacgttcatgcaccaaccgtcgtgtacaggggaaacctaatttagacgagatatgc
cggtgtctcataaaagatagaaataaaccaaaatgtcccgagttcataggcaaagatgat
attgtagctcacccatcacttcagcaaaatgaagttcatgatattgaagatcttgtcaaa
attggatatgctgttagaggttgtccatactttgctgcctgggacatgtatgagagggca
caaattgttttttgcccttattcctatatagttgaccaactcattcgacaagaaaaactt
gaagacaaattgaatggggccattataatctttgacgaagcacacaatatggaagacatt
gctcgtgaagcaggcagcattgacttgggagaagagactcttttcaaattacagagtgaa
ctacaacttctaagcctggcgatcccaatgatatatcaacccgtgtgtgatgctatagac
ggattgataagctggattggaagcagaaaggactccctagcaaaacgtgatcctcaacac
tatttctctagctggaccggagacaaagctttaagggagctagaggaatctaatatcact
cgaaaaggcttccggaaattatcgaactgcttaattgatgcaatcgaaagatcaatgaaa
gaaatacgtcctcatttgagtgggatatttgtctccacacttcaagagttgttagttaca
cttggatacttcttttcaagagatggaagtcacagtcacaccctcgattacgaactgggt
ttacaacgctttattaaaagaggagattcttctgggaagtggacacatactttgagtttg
tggtgcatgaatccatctgttgttttcaaagccatagttgatctttcttcatccattatt
ttaacatctgggactttgtcaccaatggactctttctcatctgaacttgggatgcagttt
ggcgcttgtttggaggctccacatgtggttgatgctaatcagcaggtgtgggctgctgga
atcttcagtggtcctagtaatcaacctctaaatgcaagttataaaacaaatgatgaatat
ccgttccaggatgctctagggaaatcattggaagagatttgctctattgtgccaggtggc
tctctcgtcttctttccaagctataagcttatggaaaaactctgtacgcgttggcgtgaa
actggtcaatggtctcggctccgcttggaaaaagacatttttattgagccaagaggagga
gcaacgggggagtttgagaatgtcctgaagggatattatgattgtataggcggaaaaaat
agattgattggaagaaataggagagcagggactcgagttgattccaagaaaggaggagca
tttcttgctgtatgtagaggaaaggtttctgaagggcttgattttagtgatgacaacgcc
agggctgtgataatcgttggcattccatttccaaacttgcatgatgtcctagtcggacta
aagagaagttataatgatacgtacaaatcatctagaaaccttcttggagggggtgaatgg
tattgccaacaagcgtatcgtgctttaaatcaagcagcagggagatgtattcggcatagg
tttgattatggtgccatcatatttttggatgagagatacagacaacaaaggaacagagtg
tctatttcaaagtggctaagacagtctatcaaactgtatgataattttgaagaatctatg
caagacttgaaatcattttttcccagtgccaaggagcatgttgaaagtaagatgttaagc
tacaaagaagtcatcgaccttgagtgtgtggtccaaactgagcctgaaacatcttttgtg
atcaatggtagttcagcatccagtccattttcttgctccagtggtttgactctagaacga
ggggggccaccgagtgttagttcccatgctttgaagagaagaaagtttatcagctctgca
gccgttattgaccttgaaaaagaaaacaaccatgacatactcacaaggagaattgagttt
ggatctgacagcagcactgaaacaagagctagagtgcagatatcttgtttgctatgcaga
agccctttaggtcacccagataataatggctcttcatatctaaattgcttggtgactcgg
tcgtccaagaagtatttactgtctctcctgaaagaaacatcaagatctgaaatgccaaca
agcgtttcagttatcgtgacacattgctcctcggttgaccagagactctgcacaaaagat
gaggggatttggtgcgagcaagatggatgtgttttcaacaccatcttctgccctttctgc
agtgtcccaaacacgacgtgtctcggagtgcaaatcatggctactgattcatcaaatgtc
cactttctcagcaaaatattgttcttttctgatcatctaaatgtcatgggtgatgctgca
atcaaggaaacgttgttggagcacaaagttacttga
DBGET
integrated database retrieval system
