Brassica napus (rape): 106450355
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Entry
106450355 CDS
T04128
Name
(RefSeq) ubiquitin C-terminal hydrolase 13-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
bna
Brassica napus (rape)
Pathway
bna03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106450355
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bna01002
]
106450355
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106450355
Enzymes [BR:
bna01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
106450355
Peptidases and inhibitors [BR:
bna01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
106450355
Ubiquitin system [BR:
bna04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
106450355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
USP7_C2
UCH
MATH_2
UCH_1
MATH
SASP
TRAF_BTBD17
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
106450355
NCBI-ProteinID:
XP_013747462
LinkDB
All DBs
Position
C1:47762919..47771392
Genome browser
AA seq
1114 aa
AA seq
DB search
MTLMTTPPIDQQEDEEMLVPHSDLVEGPQPMEVAQPEAAATTVENPPAEEIPTLKFTWST
QGFTRLNVRKLYSDIFVVGDYKWRILIFPKGNNVDHLSMYLDVADAASLPYGWSRYSQFS
LAVVNQMNSKYSIRKETQHQFNARESDWGFTSFMPLSELYDPTRGYLVNDTLQIEAEVAV
RKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTESDAPTAS
IPLALQSLFYKLQYNDTRVGTKELTKSFGWDTNDSFMQHDVQELNRILSEKLEDKMKGTV
VEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEG
DNKYQAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDR
ENRKYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEVV
NRALEEQYGGEEELPQNNPGVNNPPIKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEH
LQVRLKKEQEEKEDKKKYKAQAHLFTTIKVARDEDITEQIGKSMYFDLVDHEKVRSFRIQ
KQTPFQQFKEEMAKEFGVPVQLQRYWIWAKRQNHTYRPNRPLLPHEEQQTVGQIREASNK
ANNAELKLFLEIERGSDESPIPPPDKSPEDILLFFKLYDPENEELRYVGRLMVKSSSKPM
DIVGQLNQMAGFAPDEEIELYEEIKFEPCVLCEHLDKKTSFRLSQIENGDIICYQKPISI
QENECPYPDVPSFLEYVHNREVVRFRALEKPKEDEFTMELSKLHTYDDVVERLAEKLGLS
DSSKIRLTSHNCYSQQPKPQPIKYRGVDLSDMLAHYNQASDILYYEVLDIPLPELQRLKI
LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKIF
PSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKETVQNQQVQNFGDPFFLV
IHEGETLEEIKTRIQKKLRVPDEDFAKWKFASFSMGRPDYLQDTDVVYNRFQRKDVYGAW
EQYLGLEHVDNTPKRAYAANQNRHAYEKPMKIYN
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgactctgatgactacaccgccgatagatcagcaagaggacgaggagatgctcgttccg
cattctgatttggtcgaaggacctcagcccatggaagttgctcagcctgaggctgctgcc
accactgtggagaatcccccagccgaggagattcccactctgaagttcacgtggagcacc
caaggtttcaccaggctcaacgttaggaagctttattctgatatatttgttgttggagat
tataaatggagaatactgatttttccaaaaggaaacaatgtcgaccatctgtccatgtac
ttggacgttgctgacgctgcgagtttgccttacggttggagcagatattcacagttcagc
cttgctgtagtgaatcaaatgaacagcaaatattccatcagaaaagagactcaacatcaa
ttcaatgcaagagaaagcgactggggttttacatcattcatgcctctcagcgagctctat
gatcccactcgtggatatttagtgaatgatactcttcagattgaagccgaagttgctgtg
cggaaggttcttgattactggtcatatgactccaaaaaggagactggttttgttggactt
aagaaccaaggtgctacctgttacatgaattctctcctgcagacgttataccacatacct
tacttcagaaaggctgtttaccacatgccaacaactgagagtgatgcacctacggctagt
atcccgttggcgctccagagcttgttttacaagcttcagtataatgacacccgtgtaggg
acaaaggagctgacaaagtcttttggttgggatacaaatgattcattcatgcaacatgat
gttcaagaactcaaccgaattctctctgaaaagcttgaggacaaaatgaagggaactgtt
gtggagggaacaatacagaagctatttgagggtcaccacatgaattacattgagtgcatt
aatgtcgattacaaatctacacgtaaagaatcattctatgacctccagcttgatgttaaa
ggctgcaaagatgtatatgcttcttttgacaagtatgttgaagttgaacgccttgaagga
gacaacaaataccaggcagaaggacatggcttgcaggatgcgaaaaaaggtgttctattc
attgactttccacccgtacttcaactccagctcaagaggtttgaatatgactttatgcga
gacacaatggtgaagataaacgatcgatatgagtttcctcttcaactggatctcgacaga
gagaatagaaaatacctatctcctgatgctgacaagagtgttcgtaatctctacacactc
catagtgtcttagtccatagtggaggagtgcatggagggcactattatgcttttattagg
ccaacactctcagatcaatggtataaatttgatgatgaacgcgtgacgaaggaagttgtg
aacagggcactggaagagcaatatgggggtgaagaagagttaccgcaaaataatcctggt
gtcaataatccacctattaaattcacaaaatattccaacgcatacatgcttgtttatatc
cgtgaaagcgataaggataaaataatatgcaacgttgatgaaaaagacatcgcagaacat
ttacaggtgaggctgaaaaaagaacaagaagaaaaggaagataaaaaaaaatacaaggct
caagctcaccttttcacgacaatcaaggtcgcaagagatgaagacatcaccgagcaaatt
ggaaagagtatgtattttgatcttgttgatcatgaaaaagttcggagttttcgaatccag
aaacagactcccttccaacaatttaaggaagagatggccaaagaatttggtgtcccggtt
cagcttcagcggtactggatttgggcaaagcggcaaaaccatacttatcgtcccaaccgt
cccctattacctcatgaagaacaacagacggttggacaaataagagaggcatctaacaag
gcaaacaatgctgaactaaagctgtttttggaaatagagcgtggatcggatgagagtcct
attcctcccccagacaagtcacctgaagacattctccttttctttaagctctatgaccct
gagaatgaagaactgagatatgttggcaggctcatggtgaaaagttccagtaagcccatg
gatatagtagggcaattgaatcaaatggctggctttgctcctgacgaggaaatagaactt
tatgaggaaataaagtttgaaccttgtgtactgtgcgaacatctagataagaagacttct
ttcagactatctcaaattgaaaatggagatatcatttgctatcagaaacctatttctatc
caggagaatgaatgtccatacccggatgtgccatcgtttttggagtacgtacataatcga
gaggtggtgcgttttcgtgctttggagaaaccaaaagaagatgagtttactatggagttg
tcaaagctgcatacgtatgatgatgttgtggaaagattggctgagaaacttggcctttct
gattcatcgaaaattaggcttacttctcacaattgctactcccagcaacccaagccccag
cctatcaaataccgtggagtagacctttcagatatgttagctcattataatcaggcgtct
gacattttgtattatgaagttctggacattcctcttcctgaactgcaacgtcttaagatt
ctaaaagtagctttccatcatgccacaaaggacgaagtggtaatccacaatatcagactg
cctaagcagagtactgtcggagatgttattaacgaacttaaaacaaaggtggagctttca
catccagatgcagaactgaggttgctcgaggtgttttaccacaagatctacaagatcttt
ccatctaccgaaagaattgagaatatcaatgaccagtactggactttacgagcagaggag
atacctgaggaagagaagaacattggccccaatgatcgattaattcacgtgtaccatttt
accaaagagaccgtacagaatcagcaagtgcaaaatttcggagatccattctttctggta
atacacgaaggtgaaactttagaagaaatcaagacccgtatccaaaagaaactccgtgtc
cctgatgaggactttgccaagtggaagtttgcttcattttcgatgggacgacccgactac
ttgcaggacacagatgtcgtttataatcgctttcagagaaaggatgtatatggtgcatgg
gagcagtatcttgggttggagcacgttgataatactcctaaaagggcttatgctgcaaat
cagaatcggcacgcatatgagaagccgatgaaaatatacaattag
DBGET
integrated database retrieval system
