Brassica napus (rape): 106450598
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Entry
106450598 CDS
T04128
Name
(RefSeq) probable pectate lyase 9 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106450598
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106450598
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GFIT
Motif
Pfam:
Pectate_lyase_4
SMIM5_18_22
Lectin_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106450598
NCBI-ProteinID:
XP_048592504
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Position
A7:8551690..8554528
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AA seq
447 aa
AA seq
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MASSSQKLTSACFVVLLIFVVCVLTATNLRNNQVSLSRKLKTEDSHSFNNSTIAIRREGV
ELNEHAVADPDQVALLQTNEQNITERRKLGFFSCGNGNLIDDCWRCDPNWHMNRKRLADC
GMGFGSNATGGRDGRFYVVTDPTDEDMEFPRSGTLRHAVIQVEPLWIIFKRDMVITLKQE
LIMNSYKTIDARGANVHVANGACITIQGITHVIVHGLHIHDCIRTGNAMVRSSPSHYGMR
NMSDGDAVSIYASSHIWIDHNSLSKCADGLVDVVMGSTAVTISNNHLTHHNEVMLLGNND
LYTQDKNMKVTIAYNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQG
NRYAAPKNRYAKQVTKRVRTEKSEWKKWNWRSEGDMLVNGAFFIQSGEGATANYESASSL
AAKPASMVGSITSTAGALGCRSGKPCY
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcgtctcagaaactgacgagtgcttgtttcgtcgtactcctcatctttgtc
gtatgcgttctcacagcgacgaatctccggaacaaccaagtctctctgtcgagaaaactg
aaaacagaggattcgcatagctttaacaattcaacaattgcgatcaggcgtgaaggtgtg
gagttgaatgaacacgcggttgctgatcccgaccaggttgccctccttcagacgaacgaa
caaaacattaccgaaaggaggaagcttggtttcttctcctgtgggaatggcaatctaata
gacgattgttggcgctgtgaccctaactggcacatgaaccgtaaacgcctcgccgattgt
gggatgggttttggtagtaacgccactggtggtcgtgacgggcgtttctacgtcgtcact
gatccaaccgacgaagacatggagtttcccaggtcaggtactctacgccacgccgtcatc
caagttgagccactatggattatcttcaaaagagatatggtgataaccttgaaacaagag
ctgattatgaatagttacaagactattgatgctcgcggtgctaacgttcacgtagccaat
ggtgcttgcatcaccattcagggtataacccacgtcatcgttcatggtctgcacattcat
gattgtataagaactgggaacgcaatggtcagaagctcgccttctcattatggaatgagg
aatatgtctgatggtgatgctgtttcaatatatgcgtcaagtcatatctggattgaccac
aactctctctctaagtgtgctgatggtctcgttgatgttgtcatgggttccactgccgtt
accatttccaataaccatctcactcaccacaatgaggtcatgttgctaggaaacaatgat
ttgtacacacaagacaagaatatgaaagtgaccattgcgtataaccattttggcgaggga
cttagacaaagaatgcctagatgcaggcatggatatttccatgtggtgaacaacgactac
acgcattgggaaatgtacgctattggaggaagtgcaaacccaactataaacagtcaaggc
aatagatatgctgctcccaagaaccgctatgcaaaacaggtcacaaaaagggtgaggaca
gagaaaagtgagtggaagaagtggaactggagatcagaaggagacatgctagtgaacgga
gcatttttcatacaatcaggggaaggagcaacagcaaactatgaaagtgcctcgagctta
gcagctaaaccagcttctatggtcggctcaatcacttctactgcaggtgcacttggttgc
cgcagtggcaaaccttgctactaa
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