Brassica napus (rape): 106450973
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Entry
106450973 CDS
T04128
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106450973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106450973
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106450973
Complex C
U5 SnRNP specific factors
106450973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
KapB
Motif
Other DBs
NCBI-GeneID:
106450973
NCBI-ProteinID:
XP_048636469
LinkDB
All DBs
Position
A5:3813198..3820315
Genome browser
AA seq
2320 aa
AA seq
DB search
MSSNNDGMLEEKSRRWTQLNSKRYGDNKRRFGHVETQKEDMPPEHVRKIIKDHGDMSSKK
FTHDKRVYLGALKFVPHAVFKLLENVPMPWEQVRDVKVLYHVTGAITFVNEIPLVVEPIY
MAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYSDNLLDVEPLEPIQMELDEEED
SAVYAWFYDHKPLVKTKLINGPSYRRWNLSLPIMATLHRLAGQLLSDNLIDRNYFYLFDK
ESFFTAKALNMCIPGGPKFEPLYRDMDQGDEDWNEFNDITKLIIRSPLRTEYRIAFPHLY
NNRPRKVKLGAYHSPMVMYIKTEDPDLPAFYYDPLIHPISSNTNKERRKRKVYDDYDDEE
EEDDFTLPEGVEPLLKDTQLYSETTSAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKE
HCPQSYPVKVRVSHQKLLKCYVLNGLHSRPPKSHKKKHLFRSLAATKFFQSTELDWVEAG
LQVCRQGHNMLNLLIHRKGLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRL
TKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIY
YRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLGRQFEGRHSKGVAKTVT
KQRVESHFDLELRAAVMHDVLDAMPEGIRKNKAKTILQHLSEAWRCWKANIAWKVPGLPV
PVENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHN
YLKDGPYVTSEEAVSIHTTTFHWLKSRKFSPIPFPPLSYKHDTKILILALERLKESYGGA
VRLNQQQREELGLIEQAYDNPHEALTRIKRLLLTQRNMKEVGIQFMDLYSYLIPVYEIDP
LEKITDAYLDQYLWYEADKRGLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSDGQC
VVMLQTKFEKLFEKIDITMLNRLLRLILDHNLADYMCAKNNVLLAYKDMSHTNSHGLIRG
LQFASFVVQFYGLSLDLLLLGLTRANEIAGPPQTPNEFMTFCDTKVETCHPIRMYARYID
RVHIVFKFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSV
FWGIKDILPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRILPKIRTAQSNAKDGVWN
LQNEQTKERTAAAFLRVDDEHMKAFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFR
EATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYAPKELGGLGMLSMGHILI
PQSDLKHSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE
AQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWW
THQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKY
KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYLGFQVQLDLTGVFMHGKIPTLKISLIQ
IFRAHLWQKIHESVVMDLCQVLDHELEALEIETVQKETIHPRKSYKMNSSCADVLLFASG
KWPMSKPSLLAESKDAFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTADSMSIY
PSPTGVVIGIDLAYNLHSAFGNWFPGSKPLVTQAMNKIMKANPALHALRDRIRKGLQLYS
SEPTEPYLSSQNYGEIFNNQIKWFVDDTNVYRVTIHKTFEGNLTTKPINGAVFVFNPRTG
QLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVH
LLDFPNVVIKGSELQLPFQACLKIEKFGDMILKATEPKMVLFNIYDDWLKSVSSYTCFSR
LILILRALHVNNEKAKMLLKPDKSVVTEPHHIWPSLTDEQWVKVEVALRDLILSDYAKKN
NVNTSALTQSEMRDIILGAEITPPSQQRQQIAEIEKQASQVIAVTTKTRNVHGDELIVST
VTPYEQAAFSSKTDWRVRAISATNLYLRVNHIYVNSDGVNESGYTYIMPKNLLKRFICVA
DLRTQIAGYLYGISPPDNPRVKEIRCVVMVPQRGSSQAVHLPLSLPENDLLNDLEPLGWL
HTQPNELPELSPQDVVSHSRILEMNKKQWDGEKCIVMTCSFTPGSCSLTAYKLTQSGYEW
GRVNQDAGGRSDPRGYVPTHYEKVQMLLSDRFLGFYMVPENGSWNYNFMGTKHAVDMKYS
VRLGYPKEYFDVEHRPTHFLEFSSMEDAEMAEGDREDIFG
NT seq
6963 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaacaacgatggtatgctcgaagagaagtctcgtagatggacgcagctaaac
tcgaaacgctatggagacaacaagaggaggttcggacacgtggagactcaaaaggaagac
atgcctcctgagcacgtcaggaagatcatcaaggaccacggcgacatgtcatcgaagaaa
ttcacccacgacaaacgcgtatacctaggagcactcaagttcgtccctcacgccgtcttc
aagctccttgagaacgtgccgatgccctgggagcaggtccgtgacgtgaaggttctgtac
cacgtcacgggagccatcacgttcgtgaacgagatcccgttggtcgtggagcctatctac
atggctcagtggggaaccatgtggatcatgatgcggagggagaagcgggaccgtcgccac
ttcaagagaatgaggtttcctccctttgatgacgaggagcctcctcttgactactcggat
aacttgcttgacgtggagcctcttgaaccgattcagatggagctagacgaggaagaagat
tccgctgtgtacgcttggttttacgaccacaagccgcttgtaaagaccaaactcatcaac
ggtcctagctacaggaggtggaatctctcgcttccgattatggcgacgcttcacaggctt
gcgggacagttgctgtctgataatttaatcgatcggaactacttctacttgtttgacaag
gagtctttcttcacagcgaaggctttgaacatgtgtatacccggcggtcctaagtttgag
cctttgtacagagatatggaccaaggggatgaggattggaatgagtttaatgacatcacg
aagcttatcattcgctcacctttgagaactgaatacagaatagcttttcctcatttgtat
aataataggccgaggaaggttaaactaggtgcgtatcacagccctatggtcatgtatata
aagaccgaggatcctgatcttcctgctttttattatgatccgttgattcacccaataagc
agcaatactaataaagaaaggcggaaaaggaaagtttatgatgattatgatgatgaggaa
gaggaggatgattttacgttacccgaaggagtggagcctttgctaaaggacacacaactc
tatagtgaaactacatctgctggaatctctttgttgtttgcgccacggcctttcaacatg
aggtctgggaggacgcggcggtccgaagatatcccactggtgtcagagtggttcaaggag
cactgtcctcagtcttatcctgttaaagttcgggtcagccaccaaaagctcttgaaatgc
tacgtgttgaacggtctgcacagtagaccacctaagtctcacaagaagaagcatttattc
cgctctctcgcggctacaaagtttttccaaagcaccgaactggactgggtcgaagcgggt
ctgcaagtctgccggcaagggcataacatgctgaatctgctgattcaccgcaagggtttg
aactacttgcatctcgactacaacttcaacttaaagccagtgaagactttaaccaccaaa
gagaggaagaagtcgcgtttcgggaacgctttccatctctgccgggagatcctccgcctg
acgaagcttgtagtcgatgcaaacgtccagttccgcctcggtaacgtagacgccttccag
ctggctgacgggcttcagtatattttctcccacgtcggccagctgacgggcatgtaccgt
tacaagtacagactcatgaggcagatcaggatgtgcaaggacttaaagcacttgatatat
taccgtttcaacaccggtcccgttggtaaaggaccagggtgtggcttctgggctcctatg
tggagggtgtggttgtttttcctacgaggaatagttcctcttctcgaacgatggctaggg
aaccttctcggccgtcagttcgaggggcgtcactctaaaggagttgcgaaaaccgtcacg
aagcagagagtcgaaagccatttcgatctggagcttcgagctgccgtcatgcacgacgtt
cttgatgcaatgccggaaggtatcaggaaaaataaagccaagacgatattacaacacctt
agtgaggcgtggcggtgctggaaagctaatattgcttggaaggtccctggtttgcccgta
cctgttgagaatatgattcttcgttatgttaagtctaaggctgattggtggacgaacgtt
gctcactacaaccgtgagaggatcagaagaggtgctacagttgataagactgtttgtaag
aagaatctaggaaggctgactcgtctttggctaaaggcggaacaggaacggcagcataat
tatctgaaagatggtccgtatgtgacttcggaggaagcagtgtcgattcatacgaccact
tttcattggctgaagtcaaggaagttctctccgattccgttccctccactgtcatacaaa
cacgacacgaagattctcatcctggcgcttgagaggctgaaggaatcatacggtggtgct
gtgaggttgaaccagcagcagcgagaggagcttggtctgattgagcaagcttacgacaac
cctcacgaagctctgacgcgtatcaaacgtcttctcctcacgcagcgtaacatgaaagag
gttgggatacagtttatggatctatacagctacttgattccagtgtacgagatagatcct
ctggagaagattacagatgcttatcttgatcagtacttgtggtacgaggctgataagcgc
ggcttgtttccgaactggatcaagccagcagactctgagccgccgccgcttctggtttac
aagtggtgtcaaggtatcaataacttgcaaggcgtatgggacacgagtgatgggcagtgt
gtggtgatgctccagaccaagttcgaaaagctctttgagaagattgatattactatgttg
aacaggcttctccgtttgattcttgaccacaatcttgcagattacatgtgcgccaagaac
aacgtgcttctggcttacaaggatatgagtcataccaactctcacggtctgatcagagga
ctccagtttgcgtcgtttgtcgttcagttttacggactgtctcttgatctcttgcttctc
ggtttgactcgagctaatgagatcgctggaccgccgcagacgcctaacgagtttatgacg
ttttgtgatacaaaagtggagacgtgtcatcccataaggatgtacgctcggtacatagac
agagttcatatagtgtttaaatttacacacgaggaggcacgtgatcttatccagcggtat
ctcacggagcatcccgatcccaacaatgagaacatggtgggatacaataacaaaaagtgc
tggccaagagatgcgaggatgaggctgatgaaacacgatgttaatctcggtagaagcgtg
ttctggggcattaaggacattctgcctcggagcatcacgactttggagtgggagaatggt
ttcgtctctgtgtacagcaaggataatcccaaccttctcttcagcatgtgtgggttcgaa
gttcggatacttccaaaaatcaggacagcccaaagcaatgctaaagatggtgtgtggaat
ctgcagaatgaacagaccaaggagaggactgcggctgcgtttctccgggtcgacgatgag
cacatgaaggcgtttgagaatcgtgtgaggcagattctcatgtcttcaggatcaacaact
ttcaccaagatagtcaataaatggaacacagctctgatcggtctcatgacttactttcgc
gaagccactgtccacacgcaagagcttttggatcttctcgtcaagtgtgagaacaaaatc
cagacgaggatcaagatagggctgaactcaaagatgcctagccggtttcctcccgttgtc
ttctacgctccaaaggaactcggcgggctgggaatgttgtcgatgggccatatcttgatc
ccgcaaagcgacctcaagcacagcaagcagacggacgttggtgtaacccactttagaagc
gggatgagccacgaggaagaccagctcataccaaacttgtaccgttatatacagccatgg
gaaagcgagtttatcgactcgcagcgcgtgtgggcagagtacgctttaaagagacaagaa
gcacaagcccaaaacaggcgtcttacattagaagatcttgaagactcttgggatagaggg
atccctcgtatcaacacactgtttcagaaggacaggcatactctagcatatgataaaggc
tggagggtgcggaccgagtttaagcagtaccaagtcctgaaacaaaacccattctggtgg
acacaccagaggcatgacgggaagctgtggaacttgaacaactaccgaaccgatgttata
caagctctcggaggcgtagagggtatcctcgagcataccctcttcaaggggacttacttc
ccaacgtgggagggtcttttctgggagaaggcgtctggtttcgaggagtcgatgaagtac
aagaagctgacgaacgcacagaggtctggtcttaaccagattccgaatagaagattcact
ctctggtggtctccgacgattaaccgggcgaatgtttacttgggtttccaggtgcagttg
gacctgacgggagtgttcatgcatggaaagattcctacgctgaagatatctttgattcag
atattccgtgctcatttatggcaaaagatccacgagagtgttgtcatggatctttgccaa
gtgctggaccatgagctggaggctttggagatagagactgtccagaaggagactattcat
ccgaggaagagttacaagatgaacagttcttgcgctgatgtacttctattcgcttcaggt
aaatggccaatgtccaaacctagcctgctcgccgagtcgaaagacgccttcgaccagaag
gcgagtaacaagtactggatcgatgtgcagcttcgatggggagattacgactcccacgat
atcgagcgttacaccagggctaagtttatggactacacagcggatagcatgtctatctat
ccgtctccgacgggtgtagtgattgggattgatctggcgtataacttgcattcagcgttt
ggtaattggttccctggttcgaagcctcttgtgactcaagcgatgaacaagattatgaag
gcgaatccggctctacacgcgttgagggataggataaggaaaggtttgcagttgtactcg
tccgagcccacggagccgtacttgtcgtctcaaaactatggggagatattcaataatcag
attaagtggtttgttgatgatactaatgtctaccgcgtcacgattcacaagactttcgag
gggaatctaacgactaagccgatcaacggtgcggtttttgttttcaatccgagaactgga
cagctgtttttgaaggttatccacacgagtgtttgggctggtcagaagcgtttgggacag
ttggcgaagtggaaaactgctgaagaggttgctgcgcttgtgaggtctctacctgttgaa
gaacagccgaagcagatcattgtcacacgtaaaggaatgctggatccgttagaggttcac
ttgcttgacttcccaaacgttgttatcaagggaagcgagcttcagcttccgttccaggct
tgtctcaagattgagaagttcggcgatatgattctgaaggcgacggagccgaagatggtt
ttgttcaatatctatgatgattggttgaagagtgtttcttcttatacctgcttttcgaga
cttattctgatcctacgtgcgcttcatgtgaataacgagaaggctaagatgttgttgaag
ccggacaagtctgttgtcactgagccgcatcacatctggccatcactcaccgatgaacaa
tgggtgaaggtggaggtagcactaagagatttaatcctttctgactatgcgaagaaaaac
aacgtcaacacttccgctctaactcaatcggagatgagagatattattctaggagctgag
atcactccgccgtctcaacagaggcaacagatagctgagattgagaaacaagccagccag
gttatcgcagtcacaacgaaaacgagaaacgttcatggagacgagctcatcgtctccacc
gtcaccccctacgagcaagcagcgtttagctccaagacggactggcgcgtgcgtgcaata
tcagcaaccaacctctacctaagagtcaaccacatctacgtgaactcagacggcgtgaac
gagtccggatacacgtacatcatgccgaagaacctcctgaagaggttcatatgcgtagcg
gatctccgcacccaaatagctggatacttgtacggtatcagccctccggataaccctcga
gtgaaggagattcgttgcgttgtgatggtgccgcagcggggaagctcccaggctgttcac
ttgccgttgtctctccctgagaatgatttgttaaacgatctcgagcccttggggtggttg
cacacgcagcccaacgagctcccggagctctcgccgcaggatgttgtctctcattcacgg
attctggagatgaacaagaagcagtgggatggagaaaaatgcattgtcatgacgtgtagt
tttactccgggctcgtgctctttgacggcttataagctgactcaaagtggatatgaatgg
ggacgagtcaaccaggacgcaggtgggaggagcgatcctcggggttatgttccaacgcat
tatgagaaggttcagatgctgttgagtgatcgttttcttgggttttatatggttcctgaa
aacggatcttggaattataattttatgggaactaagcatgcggtggatatgaagtacagc
gttagacttggatacccgaaggagtactttgacgtggagcatcgacctactcatttcttg
gagtttagtagcatggaggatgctgaaatggctgagggagatcgagaggacatctttggt
tga
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