KEGG   Brassica napus (rape): 106451277
Entry
106451277         CDS       T04128                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
bna  Brassica napus (rape)
Pathway
bna04120  Ubiquitin mediated proteolysis
bna04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106451277
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    106451277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bna04121]
    106451277
Enzymes [BR:bna01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106451277
Ubiquitin system [BR:bna04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106451277
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     106451277
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 zf-C3HC4_2 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd EIF3I WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML zf-C3HC4 WD40_RFWD3 WD40_like zf-C3HC4_3 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_WDR35_TULP_N zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-C3HC4_4 U-box zf-RING_5 YbfN YpoC Beta-prop_IFT122_2nd DUF1664 zf-RING_10 zf-RING_6 Prok-RING_4
Other DBs
NCBI-GeneID: 106451277
NCBI-ProteinID: NP_001302788
UniProt: E7CQW5
LinkDB
Position
A5:complement(6370847..6374580)
AA seq 677 aa
MEEIRKDPLVPAVKPDPRTSSIGEGHNHRHENDEGGSGGLEIGAPDLDKDLLCPICMQVI
KDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKT
ASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKV
DELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPPEKSHTGF
NSNSLSIRGGNPSGNFQNKKVVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVSMARKKRI
HAQFNDLQECYLQKRRQLVDQPHANQESDNSVVRREGYSHGLADFQSVLTTFTRYSRLRV
IAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQCPIVEMS
TRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSM
LVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNI
SQPLHVFSGHKKAVSYVKFLSNNELESASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGL
TVNSEYLACGSETNEVYVYHKEITKPVTSHRFGALDMEEAEEEAGSYFISAVCWKSDSPT
MLTANSQGTIKVLVLAA
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggaagagattaggaaggatccgctagttccggctgtgaaacccgatccgagaacctcc
tccatcggagaaggccacaaccaccgccacgaaaacgacgaaggaggaagcggtggttta
gagattggagctccggatctggataaggacctgctctgtccgatttgtatgcaggttata
aaggacgctttcctcacggcgtgtggacacagcttctgctacatgtgcatcatcacgcac
cttaggaacaagagcgattgtccctgttgcagccagcacctcacaaataatcagctttac
cctaacttcttactcgataagctgttgaagaaaacttcagctcggcatgtgtcgaaaact
gcatcgcctttggatcagtttcgggacgcattacaacggggttgtgatgtgtctataaaa
gaagttgataatctgctcacgcttcttgcggaaaagaagaggaaaatggaacaggaagaa
gctgagaggaacatgcagatactcttggactttttgcattgtctgaggaagcagaaagtt
gatgaactaaacgaggtgcaaactgatcttcagtatattaaagaggacataaatgcagtt
gagagacatagaatagatttataccgtgctcgggataggtactctgtgaagctgcggatg
ctcggagatgatccaagcacacgaaatgcttggccgcctgagaagagtcacaccggcttc
aactccaattctctgagcataagaggagggaatccatcaggcaattttcaaaacaaaaag
gtagtagaggggaaggcacaaggaagctctcacgggatatcgaaaaaggatgcacagagt
ggatcagattcccaaagtttgaatcagtcatctgtctcaatggccaggaagaaacggatc
catgctcagttcaacgatctacaagagtgttacctccaaaagcggcgtcagttggtagac
caaccacatgctaatcaagaaagtgataatagtgtagtacgtagggaaggatacagccac
ggccttgcagattttcaatctgtgctcactacctttactcgctacagtcgtctgagagtt
atagcggagatccggcatggggatatatttcattcagctaacattgtatcaagcatagag
tttgatcgtgatgatgagctcttcgccactgctggtgtttctagatgtataaaggttttt
gacttctcttcggttgtaaatgaaccggcagatatacagtgtccgattgtggagatgtca
actcgctccaaacttagttgtttgagttggaataagcatgagaaaaaccatatagcaagc
agtgattatgaaggaatagtaactgtgtgggatgtaaccactagacagagtcttatggag
tatgaagagcacgaaaaacgtgcctggagtgttgacttttcgcgaacagaaccatctatg
cttgtatctggtagtgacgattgtaaggttaaagtttggtgcacaaggcaggaagcaagt
gtgcttaacattgatatgaaagcaaacatttgttgtgtcaagtacaatcctggctcaagc
aacttcattgcggtcggatcagctgatcatcacatccattactacgatttaagaaacata
agccaaccacttcatgtcttcagtggacacaagaaagcggtctcctatgtgaagtttttg
tccaacaacgagctcgagtctgcgtctactgatagcacactacgcttatgggatgtcaag
gacaacttgccagttcggacatttagaggacacactaacgagaagaactttgtgggtctc
acagtgaacagcgagtatctcgcctgcggaagcgagacaaatgaagtatatgtatatcac
aaggagatcacgaaacctgtgacatcgcataggtttggagcactagacatggaggaagca
gaggaagaggcgggttcatactttattagtgcggtttgctggaagagcgatagtcccacg
atgctgactgcgaatagccaaggaaccatcaaagttctggtactcgctgcttga

DBGET integrated database retrieval system