Brassica napus (rape): 106451403
Help
Entry
106451403 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106451403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106451403
03012 Translation factors [BR:
bna03012
]
106451403
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106451403
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106451403
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106451403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
HA2_N
AAA_22
Ank_2
nSTAND3
AAA_19
Ank_5
ATPase
AAA_7
Sigma54_activat
T2SSE
AAA_11
NPHP3_N
Rad17
Myosin_head
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
106451403
NCBI-ProteinID:
XP_013748786
LinkDB
All DBs
Position
A5:7622668..7628420
Genome browser
AA seq
1232 aa
AA seq
DB search
MGNKRSTSENAAGEQPSVKATRIWASKVIQDFRASANEAYTFEHNLSNIERRVIHLMCRK
MGIRSKSSGRGDQRCLSIYKRSHKNGWKSNREKLKCVSFPPGADAILQDLFTHYPPCDGD
AAETSFNKYVGRSGKQGRRGDDDFFRKPQISCDEIVEKAASLSSRLRKDKALQEISKLRS
KLPIASFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSAKKETCKIVCTQPRR
ISAMSVSERISCERGESIGDNIGYKVRLQSKGGRRSSVVFCTNGILLRVLVGKGSVSYVS
DITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCPVVRV
PGFTYPVRSLYLEDVLSILKSGGDNNNLCSTNLSIPVQNLTDEDKLALDEAIILAWTNDE
FDALLDLVSSQGSPQVFNYQHQSTGLTPLMVFAGKGRISDVCMLLSFGADSILKSKDGMT
ALELAEAENQPEAAQIIREHAENSQSNSQQAQQLLDKYMATINPEQVDVSLILQLVRKIC
GDSEDCGGAVLVFLPGWDDINKTRQRLLDSPFFKDSSKFDIICLHSMVPAGEQKKVFSRP
PRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPHNNVSTLQSSWVSKANAKQRE
GRAGRCQPGICYHLYSRLRAASMPEFKVPEIKRMPVEELCLQVKILDPNCKANNFLQKLL
DPPVDQSIANALSILQNIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVNCLDPAL
TLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKEKGLL
AEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPSDISSCSQNSRDPGILRAVLAVGLY
PMVGRLCPSFGKNRRSIVETASGAKVRVHSLSNNFNLSSREYDESLVVFDEITRGDGGMH
IRNCTVARDLPLLLISTEIAVAPIESSDVDDSEEEEEEGDSSNEERININKVESRGGEKV
MSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRHPRENLPPHLGASMHA
IACILSYDGHAGLSSKHSKTEMYETGGGEEKPNSFLSSLFWSLSLKQTKPSSRQRKRNRQ
HGFNTAPTEASSMPRQQSNNNQRKPESANSLVSGNKKENKPSDQVCGNQQPNTAPREAAV
SIAKNQSSKKSKTRSGNNSDSGKKKRRVCSKD
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagaggtccacgtctgaaaatgcagctggcgagcaaccttccgtcaaagca
actaggatttgggcttctaaggtcatccaagactttcgagcctccgctaacgaagcttac
acgtttgagcataatctttcaaacatcgaacgtagagtcattcatctgatgtgtcggaaa
atgggtattcgatccaaaagttctgggcgtggggatcaaaggtgtctttccatatacaaa
aggagtcacaagaatggatggaagtcaaacagagagaagctcaaatgtgtctcgtttccg
ccaggggctgatgctattctgcaggacttgttcactcactatccaccttgtgacggagac
gctgctgaaacgtcgtttaacaagtatgtaggtcgttcaggtaaacaagggcgacgggga
gatgatgactttttccggaaaccacagattagttgtgacgagattgtagaaaaggcggcg
tctttgagttctaggctaaggaaagataaagctctccaagagatctctaagctgcggtca
aagcttcccattgcatcatttagagacgcaattacctctgctgttgaatccaaccaggtt
attctcatttctggtgaaactggttgcgggaaaactactcaggtgcctcaatatctttta
gaccatatgtggtcagccaaaaaagagacttgcaaaattgtttgcacccaacctcgtcgt
atctctgccatgtcagtttctgaaagaatatcctgtgaaagaggtgaaagcattggagac
aacattggttacaaggttagactgcagagcaaaggtggaaggcgctcatcagttgttttc
tgcaccaatggcattctcctgagggtgcttgtaggcaagggctctgttagctatgtttcc
gacataactcatatcattgtggatgaaatccatgaaagggattgctactccgatttcatg
ttggcaattataagggacttgcttccatcaaatcctcatctccgtctgattctaatgagt
gctacgcttgatgctgagagattttctggatattttggaggttgccctgttgtccgtgtc
cctggattcacttatccagtgagaagcttatatctggaggatgtgctctctattcttaaa
tcaggtggagataataacaatctatgctctaccaacttgagtataccggtccagaacttg
actgatgaagataaacttgctttagacgaagcaatcatcttggcttggacaaatgatgag
ttcgatgccctcttagatctagtttcttctcagggaagtccacaggtcttcaactatcag
caccaatcaactgggctaacaccacttatggtctttgctggaaagggaaggatcagcgat
gtctgcatgctcctctcatttggcgcagactcgatattaaagtctaaagatggtatgaca
gcgttagaactggccgaagcagagaatcagccagaggctgctcaaatcatcagggagcat
gctgaaaattcacagtctaactctcagcaagcacaacagttacttgataagtacatggcg
acaatcaatccggagcaggtcgatgtgagtcttatactccagctagtaaggaagatatgt
ggtgattcagaagattgtggtggtgctgttctagtttttctacctggttgggatgatata
aacaaaacaagacagagactacttgatagcccttttttcaaagatagcagtaaattcgac
atcatatgtcttcactcaatggttccagcaggggaacagaagaaagtatttagccgccct
cctcgaggttgccgcaagattgtgcttgcgactaatattgctgaatcagcagttacaatt
gatgatgtggtttatgtgatagatagtggccggatgaaggagaagagctatgatcctcac
aataacgtttcaactcttcaatcttcttgggtctccaaagcaaatgctaaacagcgtgag
ggtcgagcaggccgttgccaacctggcatttgttatcatctctattctagacttcgtgca
gcctctatgccggagtttaaagttcctgagattaagaggatgcctgtagaagaactctgc
ttacaggttaagatacttgatccaaattgtaaagcaaataatttccttcagaagttgttg
gacccgcctgttgatcaaagcattgcaaacgccttgagcatcctacagaacatcggggcc
ctgacacctgaggaagagctgacagaactcggagagaagtttggtcatctcccggttcat
cctcttataagcaaaatgcttttcttcgctgtattagtaaactgtctggatccagcactt
acactggcgtgtgcagccgactacaaggaaccgtttacaatgcctatgtcgcccgttgaa
agacagaaagctgctgctgcgaaacttgagctcgcgtcgctttgtggcggtgacagcgat
cacctagcggttgttgccgcctttgaatgctggaaaaacgctaaagaaaaaggtcttttg
gctgagttttgctctcagtactttgtctccccaagtgctatgaagatgttggatcagatg
cgtagccagcttgagtcggaacttaaaagacacgggattattccaagcgacatctcgagt
tgtagccagaactcgcgtgatccgggtatactccgtgccgtcctagcggtaggattgtat
cctatggttggaagactgtgcccatcttttggtaaaaatagaagatctatagtagagact
gcgagtggtgccaaagtccgtgtgcattcgctttcaaacaacttcaacttgtcgtcgagg
gagtatgatgaatctttagttgtgttcgatgagatcacacgtggagatggaggcatgcac
ataagaaactgcaccgttgctcgcgatcttcctttgttgctgatctcaacagagatagct
gtagctcctatagagagtagtgatgttgatgatagtgaggaagaagaagaagaaggagat
tctagtaatgaagagaggatcaatataaataaagtagagagtaggggtggtgagaaagtg
atgtcttcgcctgaaaattcagtcaagttggtagttgatcggtggctgcctttcaaaacc
acagcccttgaagttgctcaaatgtatattttgcgtgaacgactaacggcgtccatcttg
ttcaaagtgagacatccacgggagaatttgccgcctcatcttggagcttctatgcatgca
atagcttgtattctctcatatgatggccatgcgggactttcatcaaaacattcgaagact
gagatgtatgaaactggtggaggggaggagaaaccgaactctttccttagctctctcttt
tggtctctgagtctgaaacagactaagccttcttctagacagaggaaaaggaatcgacag
catggcttcaacacggctccaacagaagcttcatcgatgcctaggcagcaaagcaataat
aatcagagaaagcctgaatcagccaacagtttggtttcgggtaacaagaaagagaacaag
ccttctgatcaggtctgtgggaatcaacaaccaaacacagctccgagagaagctgctgta
tcaatagctaagaatcaaagcagcaagaaaagcaagacaaggtcaggcaacaactcggat
tcgggtaagaagaaaaggcgtgtatgttccaaagattga
DBGET
integrated database retrieval system
