Brassica napus (rape): 106451517
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Entry
106451517 CDS
T04128
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
bna
Brassica napus (rape)
Pathway
bna00730
Thiamine metabolism
bna01100
Metabolic pathways
bna01240
Biosynthesis of cofactors
Module
bna_M00897
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
106451517
Enzymes [BR:
bna01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
106451517
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Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-GeneID:
106451517
NCBI-ProteinID:
XP_013748902
UniProt:
A0A078IWI0
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Position
C4:complement(16252570..16256043)
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AA seq
646 aa
AA seq
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MSSVHSSTLMSVVCNNNNKNHSAWPKLPNSSLLPGFDVVVQAAAVRFKKDTTTTRATLTF
DPPTTNSERAKQRKHTIDPSSPDFQPIPSFEECFPKSTKEHIEVVHEESGHVLKVPFRRV
HLSGGEPAFDNYDTSGPQTVDPHVGLPKLRKEWIDRREKLGTPRFTQMYYAKQGIITEEM
LYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSI
EEEVYKVQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAEN
LTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE
NFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQ
VMNEGPGHVPMNKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALG
TALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEFRW
MDQFALSLDPMTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYGTA
EEALRKGMEAMSQEFNVAKKTISGEQHGEVGGEIYLPESYVKANQK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtacacagtagtactttgatgtctgtcgtatgcaacaacaacaacaagaac
cactccgcctggcccaaacttccaaactcctccttgctacctggcttcgatgtggttgtc
caagctgctgccgttcggttcaagaaagacacaacaaccacacgagccacgttgacgttt
gatccaccaaccactaactcagagagagccaagcagagaaaacacaccatcgacccttct
tctcctgattttcagccaatcccatcgtttgaggaatgcttccctaagagcactaaagaa
cacattgaggttgttcatgaggaatctggtcatgttctcaaagttcctttcagacgtgtg
catctgtctggtggtgagccagcttttgataactacgacactagtggtcctcaaactgtt
gacccacacgttgggcttcctaagctaaggaaggagtggattgatcgtcgcgagaagcta
ggaacaccaaggttcacccaaatgtactacgcaaagcaaggaatcataaccgaggagatg
ctctactgcgctacaagggagaagctcgaccctgagtttgtgagatcagaagttgcacgt
gggagagccatcatcccttccaacaagaagcatttggagcttgaaccgatgattgtcggt
agaaagttcttggtcaaggtcaatgccaatatcggaaactcagccgttgcaagctccatt
gaagaagaggtctacaaggttcagtgggcgaccatgtggggagctgatacaatcatggac
ctctcgactggtcgtcacatccacgagacacgcgagtggatcctaaggaactcagctgtt
cctgttggcaccgtccccatttatcaagcccttgagaaagtggatggtattgctgagaat
cttacctgggaagtgttcagagagactctaattgaacaagccgagcaaggtgtggactac
ttcactatccacgctggtgttctgctgcgttacattcctttaacggctaagcgtatgact
gggatcgtttctcgtggaggatccatccatgctaagtggtgcttagcttaccacaaggag
aactttgcctatgagcactgggatgatattctagacatctgtaaccagtatgatgtggct
ctttcaataggggatggtctgagacctggatccatctatgatgctaatgacactgctcag
tttgctgagcttcttactcaaggtgaacttactcgccgagcatgggagaaagatgtgcag
gtgatgaatgaagggccagggcatgtgccaatgaacaagattccagagaatatgcagaag
cagcttgaatggtgtaacgaggcaccattctacacgcttggtcctttgactactgatatt
gctcctggatatgatcacatcacctccgccattggagctgccaatattggagccttgggc
acagctcttctttgctatgtaacacccaaagagcatctcgggttaccaaacagagacgat
gtgaaggctggggttatagcttacaagatagccgcacatgcagctgatctggccaagcag
catccacatgcacaggcgtgggacgatgcgctgagcaaggcgcggtttgagtttaggtgg
atggatcagtttgctctgtccttggaccctatgaccgctatgtccttccatgatgagact
cttccagctgatggagcgaaggttgcacacttttgctccatgtgtggaccaaaattctgc
tccatgaagataactgaagacatcaggaagtatgcagaggagaatggttacggcactgct
gaggaagcgctcagaaaagggatggaggctatgagtcaagagttcaatgttgcaaagaaa
acaatcagcggagagcagcacggtgaagttggtggtgaaatctacttgccagagagctat
gtcaaggctaatcagaagtaa
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