Brassica napus (rape): 106451520
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Entry
106451520 CDS
T04128
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
bna
Brassica napus (rape)
Pathway
bna00730
Thiamine metabolism
bna01100
Metabolic pathways
bna01240
Biosynthesis of cofactors
Module
bna_M00897
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
106451520
Enzymes [BR:
bna01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
106451520
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GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-GeneID:
106451520
NCBI-ProteinID:
XP_013748905
UniProt:
A0A078I3N6
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Position
A5:complement(8265300..8269429)
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AA seq
646 aa
AA seq
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MSSVHSSTLMSVVCNNNNKNHSAWPKLPNSSLLPGFDVVVQAAAVRFKKDTTTTRATLTF
DPPTTNSERAKQRKHTIDPSSPDFQPIPSFEECFPKSTKEHIEVVHEVSGHVLKVPFRRV
HLSGGEPAFDNYDTSGPQNVNPHAGLAKLRKEWIDRREKLGTPRYTQMYYAKQGIITEEM
LYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSI
EEEVYKVQWATMWGADTIMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAEN
LTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE
NFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQ
VMNEGPGHVPMNKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALG
TALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEFRW
MDQFALSLDPMTAMSFHDETLPADGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYGTA
EEALRKGMEAMSQEFNVAKKTISGEQHGEVGGEIYLPESYVKANQK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgtacacagtagtactttgatgtctgtcgtatgcaacaacaacaacaagaac
cactccgcctggcccaaacttccaaactcttccttactacctggattcgatgttgttgtc
caagctgctgccgttcggttcaagaaagacacaacaaccacaagagccacgttgacgttt
gatccaccaaccactaactcagagagagccaagcagagaaaacacaccatcgacccttct
tctcctgattttcagccaatcccatcgttcgaggaatgcttccctaagagcactaaagaa
cacattgaggttgttcatgaggtatctggtcatgttctcaaagttcctttcagacgtgtg
catctgtctggtggtgagccagcttttgataactacgacactagtggtcctcaaaatgtt
aacccacacgctgggcttgctaagctaaggaaggagtggattgatcgtcgcgagaagcta
ggaacaccaaggtacacccaaatgtactacgcaaagcaaggaatcataaccgaggagatg
ctctactgcgctaccagggagaagctcgaccctgagtttgtgagatcagaagttgcgcgt
gggagagccatcatcccttccaacaagaagcatctggagcttgaaccgatgattgtcggt
agaaagttcttggtcaaggtcaatgccaatatcggaaactcagctgttgcgagctccata
gaagaagaagtctacaaggttcagtgggcgaccatgtggggagctgacacgatcatggac
ctctcaactggtcgtcacatccacgagacgcgcgagtggatcctaaggaactcagctgtt
cctgtcggcaccgtccccatttaccaggccctagagaaagtggatggtattgctgagaat
cttacctgggaagtgttcagagagactcttattgaacaagccgagcaaggtgtggactac
ttcactatccacgctggtgttctgctgcgttacattcctttaacagctaagcgtatgact
ggaatcgtttctcgtggaggatccatccatgctaagtggtgcttggcttaccacaaggag
aactttgcctatgagcactgggatgatattctagacatctgtaaccagtatgatgtggct
ctttcgataggtgatggtcttagacctggatccatctatgatgctaatgacactgctcag
tttgctgagcttcttactcaaggtgaactaactcgccgagcatgggagaaagatgtgcag
gtgatgaatgaagggccagggcatgtgccaatgaacaagattccagagaatatgcagaag
cagcttgaatggtgtaacgaggcaccattctacacacttggtccattgactactgatata
gctcctggatatgatcacatcacctctgccattggagctgccaatattggagccttgggc
acagctcttctttgctatgtaacacctaaagagcatctcgggttaccaaacagagacgat
gtgaaggctggggttatagcttacaagatagccgcacatgcagctgatctagccaagcag
catccacatgcacaggcgtgggacgatgcgctgagcaaggcgcggtttgagtttaggtgg
atggatcagtttgctttgtccttggaccctatgaccgctatgtccttccatgatgagaca
cttccggctgatggagccaaggttgcacacttctgctccatgtgtggaccaaaattctgc
tccatgaagataactgaagacatcaggaagtatgcagaggagaatggttatggcactgct
gaggaagctctcagaaaagggatggaggctatgagtcaagagttcaatgttgcaaagaaa
accatcagcggagagcagcacggtgaagttggtggtgaaatctacttgccagagagctat
gtcaaggctaatcagaagtaa
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