Brassica napus (rape): 106451577
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Entry
106451577 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP93B
KO
K14309
nuclear pore complex protein Nup93
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106451577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106451577
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106451577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
106451577
NCBI-ProteinID:
XP_013748980
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Position
A9:complement(35936642..35941503)
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AA seq
862 aa
AA seq
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MANDQEMSGWTDLLHSSTKLLEQAAPSSQFPPLQRNLDQLEALSRKLKAKTLRSEAPSQS
IAATRLLAREGINAEQLSRDLRSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEA
QKDNVRSFNDYMLKVLEEDCRKEKRDFLQSRSKLSMLPKTKMIDTSRDTHAGQLVPVASS
PQVSSNTGTELVSLANKPIHEKKAHVYAEVVKKLNSSRERGLPFKPATSFKDAYGSLGID
LTRGKSVNVQKLWQLIQAMTGEDSAVHKGVSKRMSLVIGARRHLECGHQKHIMDTIQSHP
TQAALGGSVGNLQRIRAFLRIRLRDYGMLDFDSGDARRQPPVDTTWQQIYFCLRSGYYEE
AREIAQSSRSSQQQFAPLLIEWITTGGTVTTNTAAIASEECEKLFRLGDRLGQTTYDKKK
LLLYTIISGSRRQIDRILREFSTLFNTIEDFLWFKLSCIRDVSSGSSSLVFNDGLVPYSL
DDLQAYLNKFEPAYYTKNGKDPLVYPYVLLLSIQLLPAIMHMSQEAGDEGYNIDAVHIAI
SLVDHSVLSEGSGTGHKLSVMDANAEASSLIRQYGSMYLHHGDMQMTLEYYAQAAIAVGG
GQLVWSGRSNVDQQRQRNLMLKQLLTEILLREGGIYFLLGARGSGEEGELGRFFPDSKSR
QQFLIEAANQCQDAGLFEKSIEIQKRVGTYAAALETINKCLSEAICSLLRGRSDGESRTA
GLVLSGNEILHTYKYYPEVCPQERERVMEQETILRELEAILSIHKLARLGNHLDALKEAA
KLPFLHLDPRLSDTTPDEFQRASSYFKTCVPDLLKVXLTCLDNVPDRDGSIRVMRSKIAG
FLASNTHQNWPRDLYEKVARSF
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaccaagagatgagtggatggactgatcttcttcactcttcgacgaagctt
ctcgagcaagcggctccttcgtctcagtttcctcctctccagaggaatttggatcaattg
gaggctttgtcgaggaaactcaaggctaaaaccctaagaagcgaagctccttcacagtct
attgctgccactagactacttgcacgggagggaatcaatgcagagcaattgtctcgtgat
ctaaggtcattcgagttgaagacgacatttgaggatgtattccctgctgaggcaacaagt
gttgaagagtacctgcaacaggttcatgaaatggctatggtatcagctatacaggaggcc
caaaaggataatgttcggagctttaatgattacatgttgaaagtcttggaggaggactgt
agaaaagaaaaacgtgacttccttcaaagtcgtagcaaactttcaatgctacctaagacc
aagatgatcgatacaagcagagacactcatgctggtcaactagtgcctgtggcttcaagt
cctcaagtatcttcaaacactggaacagaacttgtgtctctggctaacaaacccattcat
gagaagaaagcacatgtctatgcagaggttgtgaagaaacttaattcttcaagagaacga
ggcttgccatttaagcctgcaacatcgttcaaagatgcttatggaagtctagggattgat
ttgactcgtgggaaatcagtcaatgtgcagaaactatggcaacttattcaggcaatgacg
ggtgaagactcagcagtacacaagggtgtttccaagaggatgtccctcgtgataggcgca
agacgccacttggaatgtgggcatcagaaacatataatggatacaattcaaagtcatccg
acacaagctgcccttggtggatctgttggaaatttgcaaagaattcgtgcctttcttcgg
attcgtctacgggactatggaatgttagattttgattcaggtgatgcacgtagacagcct
ccagttgatactacttggcagcagatatatttttgcttgagaagtggctactatgaggag
gctagagaaatcgcccaatcatctcgttcatctcaacaacagtttgctccgctgcttata
gagtggattaccacaggcggtactgtgactacaaatactgccgctattgcttctgaagaa
tgtgagaaactgtttaggttaggtgatcggttgggccaaacaacatatgacaagaagaag
ctcctactctacactatcatatctggttcccggaggcaaattgatcgcatcttgagggaa
ttttctacgctcttcaacacaatagaagattttctctggttcaagttatcatgcatacgt
gatgtttctagtggatcttcatctttggtcttcaacgatgggctagttccttacagttta
gatgaccttcaggcttatcttaataagtttgagcctgcttattacactaagaatggcaaa
gaccctctggtatacccatatgttctgcttcttagtattcaattactaccggcgatcatg
cacatgtctcaagaagcaggagatgaagggtataacatcgacgctgtgcatatagcgatt
tctctagtggaccattccgttctctctgaaggatctgggactgggcacaaacttagcgtg
atggatgcaaatgctgaggcgtcgagtctgataaggcaatacgggtcgatgtatttgcat
catggtgatatgcaaatgacgctggaatactatgcacaagctgctattgcagtaggaggg
gggcaactagtttggtccgggagaagcaatgttgatcagcaaaggcaaaggaacttgatg
ctgaagcaactactgactgagattctgttacgagaaggtggtatttactttctgcttggt
gctagaggttccggtgaagaaggcgagcttggaagattttttcctgattcaaaatcgagg
cagcagttcttgatcgaagctgcgaatcaatgtcaagacgctggattatttgagaaatcc
atagaaatacagaagagagttggtacctatgcggctgcattggaaacaataaacaagtgt
ctatctgaagccatttgctctcttctccgtggaaggtcagatggtgaaagccgaacagca
ggactcgttctctcaggaaacgagattctccacacgtacaaatactaccctgaagtctgt
ccccaggaaagagaacgggtcatggaacaagaaacaatactacgagagcttgaggcaata
ctgtcgatccacaagttggccagactgggcaatcatctagacgccttgaaggaagcagct
aaactcccgttccttcatctcgacccgagactctccgacacaaccccagacgagttccag
agagcgtcctcttacttcaagacttgtgtccctgatttactaaaggttngtttgacttgt
ctggacaacgtacctgaccgtgatggatccatccgggtcatgagatctaagattgctggg
tttcttgcaagcaacacacaccagaactggccccgagacttgtatgagaaggttgctcga
agcttttga
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