Brassica napus (rape): 106451661
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Entry
106451661 CDS
T04128
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase isoform X1
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
bna
Brassica napus (rape)
Pathway
bna00240
Pyrimidine metabolism
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
106451661
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
106451661
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Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
DUF6750
Beta-AFase-like_GH127_cat
Motif
Other DBs
NCBI-GeneID:
106451661
NCBI-ProteinID:
XP_013749068
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Position
A5:13564071..13566655
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AA seq
334 aa
AA seq
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MASSSSSAALYRISNLQNHISPLEATNKQLRSLVKISPQVSEALSNGRAVVALESTIISH
GMPYPQNLQTAKEVESIVRENGAVPATIAILNGVPCIGLNEDELERLASLGKSVQKTAGR
DIAYVVATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHANQTMDISSDLIALGRTP
IAVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSRVDSPEDCAR
VIDANKKLNRQAGILFAVPIPKQHSAAGNLIESATQRALTEAREQNVTGNAETPFLLARV
NELTGGTSLAANIALVKNNALIGSQIAVALSQLT
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcttcttcttcggctgctctttatagaatctcaaatctccagaatcatatc
tcccctcttgaagcaaccaacaagcagcttaggagtctggtgaagatatctccacaagta
tctgaagccttatccaacggacgtgctgtggtcgctcttgagtcaaccattatctcccat
gggatgccttaccctcagaacctgcaaacagcaaaagaggtggagtctattgtgagagag
aatggagcagttcctgccacaatagctatcttgaacggagttccttgcataggtctgaac
gaagacgagcttgaacgtcttgcatctctggggaaaagtgtccaaaagactgcaggcagg
gacatagcatatgttgtggctacaagaggaaatggtgcaactacagtctctgcaaccttg
tttttcgcttctatggttggcatccaagtctttgtaaccggtggaattgggggtgtacat
aggcatgccaaccaaactatggacatatcatctgatcttattgcacttggaaggactcct
atagctgtgatatcagcaggcgttaaatccatacttgatattccaaagactcttgaatat
ttggaaactcaagaagtgtatgttgctgcatacaagagcgatgagtttccggcatttttc
acagaaaaaagcggctgtaaggcaccttctcgtgtagatagccctgaagactgtgctcga
gtaatagatgcaaacaagaagctaaaccgtcaggcagggattctatttgctgttccaatc
ccgaaacagcattcagccgctggaaatcttatagaatcagcaacacagcgtgctcttaca
gaagcaagggaacaaaacgttacgggaaatgcagaaactccgttcttgcttgcacgggta
aatgagttaactggaggcacttcacttgcagcaaacattgcgcttgtgaaaaacaatgca
cttatcggttcgcagattgcggtagccctttctcagctaacgtga
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