Brassica napus (rape): 106452011
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Entry
106452011 CDS
T04128
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
bna
Brassica napus (rape)
Pathway
bna04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106452011
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bna04040
]
106452011
Ion channels [BR:
bna04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106452011
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
DUF6525
TARP
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
106452011
NCBI-ProteinID:
XP_013749470
LinkDB
All DBs
Position
Unknown
AA seq
753 aa
AA seq
DB search
MEKDDVPMLPVSDSSSLSRTRPFTSRSRSVSLANTSSIIDGFDSSTVVLGYTGPLRTNRR
PPLVQMSGPLSSTRSSEPLFLPPPPTSTRDVSSSQPERYPSFAALEHKNSEEEFVLKHAH
LLRSGQLGMCNDPYCTTCPYYYNRKAAQIPTSRVSAIFDSTFHDAKGWARRFATSINRHL
PGIMNPHSKFVQSWTKFFAFSCLLAIFIDPLFFFLILVKQNNNCIEIDWPMAHTFVAVRS
VTDVLFSVNILLQFRLAYVAPESTVVGAGQLVDHPRKIASHYFRGKFLLDLFIVMPLPQI
LILWIIPAHLAISGANYAKNLLRAAVLFQYIPKLYRLLPLLAGQTPTGFIFESAWANFFI
NLLTFMLAGHVVGSCWYLFGLQRVNQCLRDACGSSDRPCRELIDCHGETSALSAAWKDNA
SARACFQEDGFPYGIYLKAVNLTNHNSLFTRYSYSLFWGFQQISTLAGNLVPSYFLGEVF
FTMGIIGLGLLLFALLIGNMQNFLQSLGRRNLEMTLRRRDVEQWMRHRRLPGDIRKRVRE
AERFNWAATRGVNEELLFKNMPDDLQRDIRKHLFIFLKKVRIFSVMDEPILDAIRERLKQ
RTYIRSSMVLHRGGLVEKMVFIVRGEIESVGEDGYVLPLSEGDVCGEELLTWCLERSSVN
PDGTRIRMPSKGPLSNRNVKCVTNVEAFSLSVADLEDVTSLFSRFLRSNRVQGAIRYESP
YWRLRAAIQIQVAWRYRRRRLQRLYTDQSSYSL
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggatgatgttcccatgcttccagtttcagactcatcatcgttatctcgtact
aggcctttcacttccaggtcacgtagcgtttccctcgcaaacacttcttcgatcattgat
gggttcgacagctcgactgttgttttaggctacacaggtcctcttcgaactaataggagg
cctcctttagttcagatgagtggtcctctctcatctactcgcagttctgagcctctcttt
cttcctcctcctcctacttccactcgtgatgtctcctcctctcagcctgagaggtaccct
tcttttgctgctctcgaacacaaaaactcagaggaggagttcgtattaaaacacgcacat
ctcttgagatctggacagttgggtatgtgtaatgatccttactgtaccacttgtccttat
tactacaaccggaaagctgcccaaatccctacttctagagtttctgccatttttgattcc
actttccatgatgctaaaggttgggctaggaggtttgctacatctattaatagacactta
ccaggaatcatgaatcctcactccaagttcgttcagagctggactaagttctttgccttt
tcttgcttgttagctatttttatagatcccctcttcttcttcctcatattagtcaagcag
aacaataattgcattgagattgattggccaatggctcacacatttgtagctgttagaagt
gtaacggatgttttgttctctgtaaacattctgcttcagttccgattagcctatgtagct
cctgagtctacggttgttggtgctggccagttggtagaccatccaagaaaaattgctagt
cattacttccgaggaaagtttttactagatttgttcatagtgatgccacttccacagata
ttgatattatggataataccagcacacttagccatatctggggcaaactatgcaaagaac
cttttacgtgctgcagttcttttccaatacattcccaagttatataggctactaccactt
cttgctggacaaacaccgactggcttcatctttgagtcggcttgggctaatttttttatt
aatcttctcaccttcatgcttgctggtcatgtcgttggctcttgttggtatctttttggt
ctgcagagagttaatcaatgccttcgagatgcttgcggtagttctgatcgtccatgcaga
gagcttatagattgtcatggtgaaactagcgctttatcagctgcatggaaagataatgcg
agtgcccgtgcttgttttcaagaggatggttttccttatggaatctatttgaaggcagtt
aatctcaccaatcataatagcctcttcacaagatacagttactctcttttttgggggttt
cagcaaatcagcacgcttgctggaaacctagttccaagttactttcttggggaggtcttc
ttcaccatgggcattatcggattggggcttttgcttttcgctcttcttattggtaatatg
cagaacttccttcaatctctcggtcgaaggaatttggaaatgactttgagacggcgtgat
gtggagcaatggatgaggcatagacggttgccaggagatattagaaagagggtgcgagag
gctgagcggttcaactgggctgctaccagaggagttaatgaagaattgttgtttaagaat
atgcctgatgaccttcaaagagatataagaaaacacctcttcatatttctcaagaaggtg
aggatattttcggtgatggatgaaccaatcttagatgctatacgtgagaggctgaaacaa
aggacttacataaggagtagcatggtcttgcaccgcggaggtctagttgagaaaatggta
ttcatagtgagaggtgagatagagagcgttggagaagatggttatgttctgccattgtca
gaaggagacgtttgtggtgaagaacttctcacttggtgcctcgaacgctcttctgtaaac
cccgatgggacaaggatacggatgccctcaaagggaccgctgagcaacagaaacgttaag
tgtgtgacaaacgtggaggcgttttcgctgagtgtagcagatcttgaagatgtaacgagt
ttgttctctcgattcctaaggagcaatcgtgtgcaaggagccataaggtatgagtctcct
tattggaggctacgagcagctattcagattcaagtggcttggagataccgaaggagacgg
cttcagagattgtacactgatcagtctagttacagcctttag
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