Brassica napus (rape): 106452014
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Entry
106452014 CDS
T04128
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452014
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106452014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
106452014
NCBI-ProteinID:
XP_013749475
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Position
A5:22423371..22428175
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AA seq
1138 aa
AA seq
DB search
MWKTPEKGDGEQNTTGLFPLFPTQANSVSAISSAPQWLRNASFTTDLSVIDAAPSTAPSL
PDVEASEEEEEGDAYRNNTEANQPRVYDLIEEEEGSESDDDDKAKKKKKKKRKRDSDEYY
TKPAKDYYLDTRPDPDNLAYGSIYRMNVPRYKLDNSQRGFESGSTKLYLRNRRGSMLEAE
IDVNSLDGKAKSDNRYWYAKNAAMERNKNFRRIRLSASSREAVDSCFDHFIPLEEGEAVQ
ESEEEDVESKESVVGTSWEDEVLNKTREFNRQTRERPHDEKAWLAFADFQDKVSSMQSQK
GVRLQTLEKKISILEKAFELNPDSEELLLALLKAYRSRDSADVLISRWEKALMQNSSSYK
LWREFLRVVQGEFSRFKVSEVRKMYSYAIQALFSACSKRHRQMDATSEPVDSALIQQELV
LVDMLVSLCRFEWQAGYRELATALFQAEMEYSIFSPSLLLSEQSKLRLFEHFWSSNGARV
GEEGAFGWSLWLEKEEEQRQKMLKEESSDDNDVGGWTGWTEQLSDRKEDSSIASANTGEG
DVNREGLDEEMEDENGMPEDDTEAMLKLLGIDVDAAASDEIKDTSTWVKWFEEEVSRDQN
QWMPTRKAGELSSVDEMGEREDEEQLSSLVLYEDINGYLFSLRSNEARLSLVYQFVDFFG
ANISPWTSSNSLWWIEKINSLETLSDSMLENLRNVHECLSKSDSANGFSLGSLLGSNSDI
SMRTEMMKFLRNAILLCLNVFPRNYILEEAVLVAEELFVTNMKTCEVATTPCQALAKRLL
KSDRQDLLLCGVYAQREAASGNMKHARRIFDMALTSICGLPKELQDNSPLLYLWYAESEV
ANSSGSSLETESSSRAMHILCYLGSGLAYVPYSSQPSSMQILRARQGFREKLKKIQSLWS
HGVTDDQSAALVCSAAVFEELTNDLSGAVEILEHMFSSVLPGRRSQSHQLEILFNYYVRM
LQRHQDDLTLSKLWNPISEGMQLYPLSPELYQALIDICNHRMTSHRLRMMFDDYSRKTPS
VVVWLFALSYELSRGGSLHRIRGLFERALAQDTLNSSVILWRCYIAYEIDIAHNPSAARR
IYFRAINACPWSKKLWLDGFGKLSTVLTAKEMSDLQEVMRDKELNIRTDIYEILLLQG
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagacaccagagaagggcgacggcgaacagaataccacaggcttgttcccgctc
ttccctactcaggcgaactccgtctctgctatttcatctgctcctcaatggcttcgcaac
gccagcttcacgacggatctctccgtcatcgacgccgcaccttcgacggctccttcccta
cccgatgtcgaggctagcgaagaagaggaagaaggagacgcttatagaaacaatactgaa
gctaatcagcctagggtttacgatttgattgaagaagaagaaggatccgagtctgatgac
gacgacaaggcgaagaagaagaagaagaagaagcggaagagggattctgatgagtactat
acgaagcctgccaaggattattacttggatactcgtcctgatccggataatcttgcttat
ggctccatctacaggatgaatgttcctcgttataaacttgataattctcagagaggtttt
gagtcaggttctacgaagctttatctaaggaataggcgtggttctatgcttgaagcagag
attgatgttaattcattggacgggaaagcaaagtctgataacagatactggtatgcaaag
aatgcagccatggaacggaacaagaatttcaggcgtattcgtttatctgcttcttctaga
gaggctgttgattcgtgctttgatcatttcattcctctggaggaaggtgaagctgttcaa
gaaagcgaggaggaagatgtggagtctaaagagtcagtggtgggaacgtcgtgggaggat
gaggtgttgaataagacccgagagttcaacaggcagacgagggaacgtcctcatgatgag
aaggcgtggctggcatttgctgattttcaagataaggtttcgagtatgcagtctcagaaa
ggtgttcgcttgcaaactttggagaagaagattagtatacttgagaaggcttttgaactg
aacccagatagtgaagaactgttgcttgcgcttctcaaggcgtaccgaagtagagacagc
gcagatgtgctgatcagtaggtgggaaaaagcacttatgcagaactcctcgagctacaag
ctgtggagggagtttctacgtgttgttcaaggggagttctccagatttaaagtatcagaa
gtgaggaagatgtattcttatgcaatccaggcactcttttctgcttgcagcaagcgacat
aggcagatggatgcaacatctgaaccagtggattctgctctcatccagcaggaacttgtt
ctagtggatatgctagttagcctctgcaggtttgaatggcaggctggttaccgggagctg
gccacagcgttatttcaagctgaaatggaatatagcatcttttctccatctttgttgcta
agtgaacagagtaaattaagactgtttgagcacttttggagcagtaatggtgctagagtt
ggagaagaaggagcttttggatggtctttgtggttggagaaagaggaggaacaaaggcaa
aaaatgttgaaagaggaatcttctgatgacaatgacgtaggcggttggacaggttggaca
gagcaattgtcagataggaaagaagacagtagtattgcttcagctaacactggagaaggt
gatgttaatcgggagggcctggacgaagagatggaagacgagaatggcatgcctgaagat
gacactgaagctatgttaaagctattaggcattgatgtcgatgctgcggccagtgatgag
attaaagatacttcaacatgggtcaaatggtttgaagaagaggtttctcgagatcaaaat
caatggatgcctactcgaaaagctggtgaactctcaagtgttgatgaaatgggcgagaga
gaagatgaagagcaactgtcaagtcttgtactatatgaggatataaatggatatctattt
tcattacgttcaaacgaggcgcgcttatctctggtataccagttcgttgatttcttcggt
gcgaatatctccccatggacatcaagcaacagtttgtggtggattgagaaaataaatagt
cttgaaacattgtcagattctatgctggaaaatttgagaaacgttcatgagtgtttgtcg
aaatcagatagtgccaacggtttcagcttgggatctcttttaggtagcaacagtgacata
tctatgcggaccgagatgatgaagtttctccgcaatgccatcttgctttgtttgaatgtt
tttccgcgaaactacattttggaagaagctgtgcttgttgcagaagagctatttgtaaca
aacatgaaaacatgtgaagtcgcaacaaccccatgccaagctttggccaaacgtctcctg
aaaagtgaccggcaggatctactactttgtggagtttatgctcagcgagaagctgcttct
ggaaatatgaaacatgcaagaagaatctttgacatggctctgacttctatctgtggcctc
cctaaggaactacaggataactctccattgctatatttatggtatgccgaatcagaagta
gccaatagtagtggcagcagtctagaaacagaatcatcatctcgtgctatgcacattctg
tgctatctgggaagtggtctagcgtatgttccttatagttcccagccttcaagcatgcaa
atccttagagcacgccaggggttcagagagaagcttaagaagatacagtcattatggtct
catggtgtcacagatgatcaatcagcagcgcttgtttgttcggcagctgtatttgaggag
ctaacgaatgacctttcgggtgctgttgagatcctggaacacatgttcagttccgttctt
ccaggaagaagaagtcaaagtcatcaacttgaaatcttgttcaattattacgtgagaatg
cttcagaggcatcaggacgacctaactttgtcaaaactgtggaaccccatatcagaggga
atgcaactgtatcctctcagtcccgagctttatcaagctttaatagacatctgtaatcat
cgtatgacatcccatagactgagaatgatgtttgatgactactcccgcaaaactccatcc
gtagttgtttggctatttgcgctttcttatgagttgagtagaggaggctccctacacagg
atccgtggattgtttgaaagggcattggcacaagatacactgaacagctcggtgattcta
tggcgttgctacattgcatatgaaatcgacatcgcacacaatccatcagcagctaggagg
atttacttccgagctataaatgcttgcccatggtcgaaaaaactatggctggatgggttt
gggaagctgagcacagtactgacggcgaaagagatgtcagatttacaagaagtgatgcga
gacaaggaactcaacattaggacagatatttacgagattcttcttttgcagggttga
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