Brassica napus (rape): 106452332
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Entry
106452332 CDS
T04128
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106452332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452332
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106452332
mRNA degradation factors
5'-3' decay
Decapping complex
106452332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF1798
DUF445
Motif
Other DBs
NCBI-GeneID:
106452332
NCBI-ProteinID:
XP_013749869
UniProt:
A0A816TIN3
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All DBs
Position
A5:complement(24663526..24669747)
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AA seq
1332 aa
AA seq
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MASSPGNTNPNNPPPFDLGTLFKPSSSPFPTPPASYPPPAGPFLQQPYAPPPPQEAAPSS
SSSLLQQQRSLPFPSPPLNLLHTPSPSPSPRTSANHNPGTHILALLNNNNNGGVTNQDPP
PPQQHQAPEIRSFPSGPLRVPSCKLPRGRRLSGEHAVYDVDVRLHGEIQPQLEVTPITKY
GSDPQLVVGRQIAVNKIYICYGLKGGNIRVLNINTALRALFRGHSQRVTDMAFFAHDVHL
LASVSLDGKVFVWKISEGSEGDDDPQITGKIVLALQILGEEDTKHPRVCWHSHKQEILVV
SIGKHVLLVDTTKVGRGEVFSSESPIQCHLDKLVDGVKIVGKHDGEVTDLSMCQWMITRL
VSSSVDGTVKIWQDFKAQPVAVLRPHDGHPVNSATFVTSPERSDHVILITGGPLNREMKI
WVPTGEEGWLLPAESESWNCTQKLDLKSSTEPRAEMAFFNQVIALSEAGLLLLANAKRNA
IYAVHLDYGSSPADTRMDYLSEFTVTMPILSFIGTNDPPEEAVVKVYCVQTQAIQQYTLD
LSLCLPPPIEENVGLEKSDSSVSREANLVEAISKPSGMKLTDLPSVDSVPKPSILVNRSK
GANTSTYPAGSASVETTAPVLVSSNGEPKASGLLSETSAAGSTYATSPQLPLSPRLSSTL
SGHQTPVDVIEPMLPHHELGGQGPSSVYSVDRQPDPAKERNLEESSRSKDNDVTPDDDVS
GMRTAQAFFKHPTHLVTPSEFLMRVPSTEASITTDDKRDRDANIQDVNIDSRDTEVEVKE
VGESSSTQNGEINYSDETEHRTSVNTEKTFYSQTTNLSTEMARDCYPGTELEESKAYEQS
VQAGDNLDSRDVSGKLPESVSSIGLSQSAATNKGKKQKSKSSQGPGLSSTSSNVANLADT
YNEQTQSSSQPILALQETMNQMMVSQKEMQRQLSNAVNGPVTKEGKRLEVALGRMIERSS
KSNADALWARLQEEIVKNEKAMRDNSQQIVNAVTNFMSKELNALFEKTIKKEFATMIPAL
ARALSPAIEKTVSSSVTESFQRGLGDKAVNQLDKSVNSKLEATITKQIQTQFQTSGRQAL
QEALRSGLEASLIPSFERSCKTMFEQVDAAFQKGMAEHTNAAQQRFDAGHSQLAHTLKET
ITSASSVTQALSRELAESQRNRLALAAAGANSSGSNTLVSQRSSGPLGALLEKVEADPIT
ELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLA
CDISKDSSRKLAWMTDVVAAINPSDPMVAVHGRPIFEQVYQILHHHRNAPGSDVSATRLI
MHVINSMLMACK
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacccggtaacactaaccccaacaatcctccgccgttcgatctcggtact
ctcttcaaaccttcgtcgagccccttccccacgccgccggcgtcttaccctccccccgcg
ggtccgtttcttcagcaaccctacgctcctcctcctccgcaagaggccgcgccttcctct
tcgagtagcctcctccaacaacagagatcactccctttcccctcgccacctctgaatctc
ctccatacgccgtcgccgtcgccgtcgccgcgcactagcgctaatcacaatcccggtaca
cacatcctggctctcctcaacaacaacaacaacggcggcgtgaccaatcaagatccgccg
ccgccgcagcagcatcaggctcccgagatccgctcgtttccttcgggtcctcttcgcgtg
ccgagctgtaagcttcctagagggaggcggttgagcggggagcacgctgtgtacgatgtc
gacgtgaggctacacggcgagattcagcctcagcttgaggtgactccgattactaaatac
gggtcggatcctcagctagttgtgggtcgccagatcgcagtgaacaagatctacatatgc
tatggattgaaaggaggaaacattcgtgttctcaatattaacaccgctttaagagcttta
ttccgtggccattctcagcgagtgacagacatggccttctttgctcatgatgttcatctc
ctggctagtgttagcttagatggaaaagttttcgtgtggaaaatatctgaaggctctgag
ggagatgatgacccccagattactggaaagattgttcttgctcttcagatacttggtgag
gaagacaccaaacatccacgtgtttgttggcactcccacaaacaggaaattttggtggtt
tcaattggtaaacacgtcctcctagttgatactaccaaagttggcagaggtgaagtattc
tcgtctgagtctccgattcagtgccaccttgataaattggttgacggtgtgaagattgtt
ggcaagcacgatggagaggttacagatttatctatgtgccagtggatgatcacacgcctc
gtttcttcttctgttgatggcacggttaagatttggcaagatttcaaggcccaaccagtt
gcagttctgagacctcatgatggccatccagtcaattcggcaacatttgtgacatcccct
gagagatctgatcacgtcattctcatcactgggggtcctctaaatcgagagatgaagatt
tgggtcccgactggggaagaaggatggctcctgccagctgaatctgagtcatggaattgt
actcagaaacttgatttgaaaagttcaactgagccacgagcggagatggcgtttttcaac
caagttatagccttgtctgaagcaggcctcctcttgcttgcaaatgcgaaaaggaacgcc
atatatgctgtgcatttggactatggctcatctccagctgatacaaggatggactacttg
tctgagtttacagtcactatgccgatattaagttttatcgggactaatgatccaccagaa
gaagccgttgttaaggtttattgtgttcagacgcaagcaatccagcagtatacattagac
ttatccttgtgtttgcctcctcctatagaggagaatgtgggtttggagaagtcagattct
agtgtttcgcgggaggctaatttggttgaagccatatcaaaaccatctggaatgaagctt
acagatttaccttcagttgattcagtgcctaaaccatctattttagtgaatagatcgaaa
ggtgctaatacttcgacttatccggcgggttctgcatctgtggagacgacagcaccagta
cttgtttcatccaacggtgagcctaaagcttctgggctgctatctgagaccagtgctgca
gggtcgacgtatgctacttcaccccagcttcctctaagtcccagactatcaagtacactt
tctggccatcagactcctgtggatgttattgagccaatgctaccacatcatgaactcggt
ggccaaggaccttcttctgtatattctgttgataggcaaccagatcctgctaaagaacga
aatttggaggaaagctcaagaagcaaggacaatgatgttacacctgatgatgatgtgtct
gggatgcgaaccgcacaagctttcttcaagcatcccacgcatcttgtaactccttcggag
tttttgatgcgcgttccgtctactgaagcttccattaccactgatgacaaaagggataga
gatgcaaatatccaggacgtcaatattgattcaagagacacagaagttgaggtaaaagaa
gtaggggaatcaagttcgacgcagaatggtgaaatcaattacagtgatgaaactgagcat
cgcacttcagtaaatacagaaaaaaccttttactcacagactacgaacctgagcactgag
atggcaagagactgttatcctggtacagagttagaggaatctaaggcttatgaacagtct
gtacaagctggggataatcttgactcgagagatgtgtctggaaagcttcctgagtcggtt
tcatcaattgggctttcacagtcagccgctacaaacaaagggaagaagcagaagtccaaa
agctcacaaggtcccggattgtcatctacatcctcaaatgttgctaatttggctgatacc
tacaatgagcaaactcagagttcaagccaacctatcttagctttgcaagaaacaatgaat
cagatgatggtttcacagaaggagatgcagagacaactgtccaatgctgtcaatggccct
gttactaaagaaggtaaaagactagaagtggctttagggagaatgattgagagatccagc
aagtcaaatgctgatgctctttgggcccgcttacaagaggagatcgttaagaatgaaaag
gcaatgcgtgataattcacagcaaattgtgaatgcagtgacaaacttcatgagcaaagag
ttaaatgcattgtttgagaaaacgataaagaaggagtttgctacaatgattccagcccta
gctcgtgcgttgtcaccagctattgaaaaaactgtatcttcctcagtcacagagtccttc
cagagaggacttggtgacaaagcagtcaatcagcttgataaatctgttaattcaaagctt
gaggcaaccataactaagcaaattcaaacccaatttcagacatctggcaggcaagccctc
caggaagctcttaggtcgggtctggaggcctcgctcataccttcctttgagaggtcatgc
aagaccatgtttgagcaagtagacgcagccttccagaaagggatggccgagcacacaaac
gcagcccaacaacggtttgacgctggacactcccagcttgctcatactttaaaggaaacc
attacttctgcgtcgtcagttactcaagcattgagccgtgaattagcggagagccaaagg
aatcgcttagctctcgccgccgctggagcaaattctagtggatcaaacaccttggtttct
caacgaagtagtggacctttgggtgctcttcttgaaaaggttgaagcagacccaataaca
gaactatccaggttgatatcggaacgcaaatatgaagaatcatttacttcagctttacag
agaagcgatgtctccatagtatcatggctctgctcacaggtggatctgcgtggactactg
gcgatgaacccgcttcctctaagccaaggcgtacttctgtcactgctgcaacagctagcc
tgcgacatcagcaaggactcatcccgtaagcttgcatggatgaccgatgtggttgcagca
attaacccatcagacccgatggtagctgtccatggtcgcccaatctttgagcaagtgtat
cagattctgcaccaccaccgcaacgcaccaggcagcgacgtctctgccacgagacttata
atgcacgtgataaactccatgctaatggcctgcaaatga
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