Brassica napus (rape): 106452362
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Entry
106452362 CDS
T04128
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106452362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106452362
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
106452362
SWR1 complex
106452362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
106452362
NCBI-ProteinID:
XP_048635886
LinkDB
All DBs
Position
A5:complement(24842854..24851589)
Genome browser
AA seq
2021 aa
AA seq
DB search
MASRGGKSIPDSAMSSKGSKSRPDSDSKPKRHKTLEAPKEPRRPKTHWDHVIEEMIWLSK
DFESERKWKLAQAKKVALRASKGMVDQASREERKLKEEEQRLRKVALNISKDVKKFWIKV
EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKHGHNESPKPILAI
ESKSDEERAEETPSELNASAGLESETLDVDEDYDINPEDASEDDEDTIEEDEKHFTKQER
QEELEALQNEVDLPVEELLRRYTSGRVSGETSPERDENEANLASVGEDDIEGDKNNLTAS
EETEGSPSVRRSNDSFDHLAVSETHTPDHKPGPKTASVKSGKEDQTYDFNDEQEDVDFVA
ATGEEKDDETTLSVEEELAKADSVDPEDEIALLQKESEMSIEELLARYKEDFGGKDLSED
DSSDIRQQADSDDENVESAECKPALQPCSEKDEGTSNEIKEDDAKDSSDKIADAAAAARS
AQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMT
IALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWM
KLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL
TGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQDKINREVIDRLHNVL
RPFLLRRLKRDVEKQLPQKHEHVIFCRLSKRQRNLYEDFIASTETQATLNSGSFFGMISI
IMQLRKVCNHPDLFEGRPIVSSFDMPGIDVQLSSRICSLLLKSPFSRVDLEDLGFVFTHH
DFSMTAWEGDEIKAISTPSDLIKQRVDLKDNPEEVPLSLVNRKNLQGTSIFEEIRKAVFE
ERVKESKDRAAAIAWWNSLRCRRKPTYSTSLRTLLTIKGPLDDIRHLKANRPSYMYSSML
ADIVLSPIERFQKVIELVEAFTFAIPAARVPSPACWCSKSDSPIFLSPSYKEKVTDLLSP
LLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDILE
AFISLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY
DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQNGEY
NTEFFKKLDPMELFSGHKTLTRKDEEEKSKNCEAELSLSNADVEAALKHAEDEADYMALK
RVEEEEAVENQEFTEEPIERPEDDELVNEDDIKSDEPADQGVAAAGSAKEEVSLVPIDNR
DERDDIITLSQEEDNDVPDDVKQMAAAAAAAGQAISSFENQLRPIDRYAIRFLEVWDPII
VEAAIENEAGFEEKEWELDHIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVL
TQHQLMEDLENEAREREAAEEAERRLALNESAHVLKPKKKKKVKKAKYKSLKKGSLGSES
KQAKTVVKVEASSDEDNEECGYVSSSDSDMVSPRLQKRMKGKKRELVFDSDEEKNSKKKA
KKHKKSLSHSDIKCKTPHDELVPSKPSDSMAVDNELKPANRGKTLGKKFIISMPIKRVLM
IKPEKLKKGNLWSRDCVPSPDSWLPQEDAVLCAMVHEYGSNWSLVSETLYGMTAGGAYRG
RHRHPAYCCERYRELMQRHVLSASDSVVNEKNLNAGSGKALLKVTEENMRALLNIAAEQP
DTEMLLQKHFTCLLSSIWRTSTRSTNNQKLSLNSPIFNRQVMGSANHAQELARKPFQGMK
ITSLSSKLVESALQDSSTSQPVDTASRSRLQEDQPINKVGLDLTLEFPRGNDDSSTHFPP
IIKLTIDGSDSFNYVNDPPGEDKLKVSRIAAEDRYRNAANACIEDSFGWASNTFPAYDPK
SRSGVKAPSLGKHKLSASDTPKSSKSKQRKLSAAEQSEVAWVRRNDPNLKFDFTPADREE
EEEDKEVSEEIEMIGCPHWYDPLLTSGLDDCSLASEPSGIE
NT seq
6066 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctagaggtggaaagtcgatacctgattcagcaatgtcgtccaaaggctccaaa
tcgagacctgatagcgactccaaacctaagcgacacaagacgctggaagctcctaaagag
ccgcgacgacctaaaactcactgggaccatgttatcgaggagatgatttggctctcgaag
gactttgagtctgagaggaagtggaagctggctcaggcaaagaaagttgctttgagggcc
agcaaaggcatggtagatcaagcttctagggaagaaaggaagcttaaggaagaagaacag
agactgaggaaagtagcccttaatatctctaaagacgttaaaaagttttggatcaaagtt
gagaaactggtgctgtacaagcatcagctagtacgcaatgagaaaaagaagaaggctatg
gacaagcaacttgagtttctgttaggccagactgagaggtactcaactatgttggcagaa
aatttagtggagccttataaacatggccacaacgaatctccaaaacctattctggctatc
gaatcaaaaagtgatgaggaaagggcagaagagacaccttcggagttgaatgcttctgca
ggtcttgaatcagaaactcttgatgtcgatgaggattatgatatcaatcccgaggatgcg
tcagaagatgatgaagatactattgaggaggatgaaaagcacttcaccaaacaggaaagg
caagaagagttggaagctttgcaaaatgaagtggatttaccagttgaggagctactcaga
cgttatacttctggtagagttagcggagaaaccagcccagaaagagatgaaaatgaagct
aatctggcatcagtaggtgaagatgatatagagggtgacaaaaacaatcttacagcttct
gaagaaactgaagggagcccaagtgttcgtcgttctaatgatagctttgatcatttagca
gtatccgagacccatacacctgatcacaagccaggcccaaaaactgcctctgtgaagtcc
ggaaaggaagatcagacctatgatttcaacgatgaacaggaggatgttgattttgttgct
gccactggtgaggaaaaggatgatgagacgacactgtccgttgaagaggaactggcaaaa
gcagatagtgtggaccctgaggacgagattgctctgctacagaaggagagtgaaatgtct
attgaagaattgcttgcaaggtataaggaggatttcggtggcaaggatttatctgaagat
gattcgtcagatatcaggcagcaagctgattcagatgacgaaaatgttgaatcagccgaa
tgtaagccagctttacagccttgctcagaaaaagatgaaggcacatccaatgaaataaaa
gaagatgatgctaaagatagtagtgacaaaattgctgatgcagcagcagcagcaagatct
gcacagccaactggatttacatactctacaacaaaagttagaacgaaattgccgtttctt
ctcaagcattctttacgtgagtaccaacacattggcttagactggcttgtcacgatgtat
gagaaaaggttgaatgggattttagctgatgaaatgggtcttggaaagacgatcatgacc
atcgctcttctcgcacatcttgcttgtgataaggggatatggggtccccatctgatcgtg
gttccaacaagtgtgatgcttaattgggaaactgagtttcttaaatggtgtcctgcattc
aaaatcctcacctactttgggagtgcaaaggagcgaaaactcaagagacaaggatggatg
aagctgaactcctttcatgtatgcataacaacctataggctagttatccaggacagtaaa
atgttcaagcgcaagaagtggaagtacttgattcttgacgaagcccatttaattaagaac
tggaagtctcagagatggcaaactctgttaaacttcaattctaaacgcagaattttgttg
actggtacaccgctacagaatgatcttatggaattgtggtcactgatgcattttctgatg
ccacatgtctttcagtctcaccaggagttcaaagattggttctgtaacccgatagcaggg
atggtggagggccaagataaaatcaacagagaagttattgatcgcttgcataatgtcctc
cgtcctttccttctacgacgccttaaaagagatgtagaaaaacaacttcctcagaagcat
gagcatgttattttctgcagattgtctaagaggcagcgcaacttgtatgaggacttcata
gcaagcacagaaacacaggctacgcttaacagcggaagcttttttgggatgataagtatc
ataatgcaactgcggaaagtttgtaatcatcctgatctctttgaggggcggcctattgta
agctcttttgatatgcctggcattgatgtgcagttgagttcgagaatctgctctctgctt
ttgaaaagtccattttccagagtcgatcttgaagatctgggattcgtattcacccatcat
gatttttctatgactgcttgggaaggggatgagatcaaggctatttcaacgccctccgat
ttgatcaagcagcgggtggacttgaaggataatccagaagaagttcctctgagtttagta
aaccgcaaaaatctgcaagggacaagtatttttgaagaaattcgtaaggccgtctttgag
gaaagggttaaagaatcgaaggatcgggcagcagccattgcatggtggaattctttgaga
tgccggagaaagcctacttactctacatctttaagaactcttctaaccattaagggtcct
cttgatgatatacgccatctcaaagctaatcgtccatcttacatgtactcctcaatgctc
gctgacatagttctttcaccgatcgagcgttttcagaaggtaattgagctagtcgaagct
ttcacgtttgcgattcctgctgcaagagtgccttcacctgcttgctggtgcagcaaaagt
gactctcctatttttcttagtccatcgtacaaggagaaagttacagatctattgtcacct
cttctgtctccgattagacctgcgattgttaggagacaagtatattttccagataggcgg
ctgatacagtttgactgtggtaaactgcaggagcttgctatgctactgagaaaattaaaa
tttgggggtcacagagcgttgatattcacgcaaatgaccaagatgcttgacatcttggag
gctttcattagtttatacggttatacctacatgcgtcttgacggttctactccaccagaa
gagaggcagacattaatgcagcggtttaacacaaatcccaagatttttctcttcatcttg
tcaacccgaagtgggggtgtaggcataaaccttgttggtgcagacacagtaatcttctat
gacagtgactggaatcccgcaatggatcaacaagctcaagatcgctgccacaggattggt
cagacacgggaagtgcatatttatcggttaataagtgagagcaccattgaagagaatatc
ttgaagaaggcaaaccagaagcgtgcgcttgataacctagttattcagaatggtgaatat
aacaccgagtttttcaagaagctcgacccaatggaattgttctctgggcataaaactctg
actaggaaggatgaagaagaaaagagcaagaattgtgaggcggagctctctctgtcaaac
gcagatgtcgaggctgctttaaaacatgcagaagatgaagcagattatatggctctcaaa
agagtagaagaagaagaagctgtggagaatcaagagtttacagaagaacctatagagaga
ccagaagacgatgagctagtaaatgaggatgacattaagtctgatgagcctgctgatcaa
ggtgtagctgcagctggttcggctaaagaagaagtttcattggtacctattgataacagg
gatgagagagatgacatcattactttaagccaagaagaagataatgatgtaccagatgat
gtcaagcaaatggctgcagcagccgctgctgctggacaagctatctcatcttttgagaac
cagctgcgtcctattgatagatatgcgattagatttttagaggtttgggaccccatcatt
gttgaggctgctattgaaaatgaagcgggatttgaagagaaagaatgggaacttgaccac
attgagaagtacaaggaggaaatggaagctgaaattgatgatggtgaagagcctcttgtt
tatgagaaatgggacgctgattttgcaacagaggcatacaggcagcaagttgaagtttta
actcagcaccagttgatggaagatctagaaaatgaagctagagagagggaggctgcagaa
gaggctgaaaggcgtttggcactgaacgaaagtgcccatgtacttaaacctaagaagaag
aaaaaggtgaagaaagccaaatataaatccctgaaaaaaggatcactcgggtccgagtca
aaacaagcaaagacagtggtgaaagttgaagcttcgagtgatgaagacaatgaagaatgc
ggatatgtgagtagcagtgactcagacatggtctcaccacgtttgcagaaacgtatgaaa
ggcaagaaaagagaattagtcttcgacagtgatgaagagaagaactcgaagaagaaagca
aagaagcataagaagtctctttcacattcagatatcaaatgcaagactccgcatgatgag
ctggttccatcaaagccgtctgacagtatggctgttgataatgaactgaaacccgcaaac
aggggtaaaaccctagggaaaaaattcatcatttctatgccaataaagcgtgttcttatg
atcaagccagagaaattgaagaaaggaaatctctggtctagagactgtgttccctcgcct
gattcttggttgcctcaggaagatgctgtattgtgtgctatggttcatgaatatgggtct
aactggagtttagttagcgagactctttacggaatgactgctggtggagcttacagagga
aggcatcgccatcctgcatattgttgtgagagatatagggagcttatgcagcgacatgtt
ttgtctgcttccgacagtgtagtgaacgaaaagaacctcaacgctggttctgggaaggct
ctccttaaagtaactgaggaaaatatgcgggcacttctaaatattgcagctgagcagcca
gatacggagatgctccttcaaaaacactttacttgcttgctgtcttcaatttggaggacg
tcaacacgctctacaaacaatcaaaagctctccttaaatagtcccatattcaatagacag
gttatgggttctgcgaatcacgctcaagaattagcgagaaaaccttttcaggggatgaag
atcaccagcttaagtagcaagttggtagaatccgctctccaggactcgagcacgagtcag
ccagtcgatactgcttctcgttctagattacaggaggatcaacctatcaataaagtggga
ttagacctaaccttggagttcccacgtggcaatgatgattcctcgactcatttcccaccc
atcataaagctaactattgatggatcagattcattcaattatgtgaatgaccctccaggg
gaagataagctcaaagtatctcggattgctgcagaggaccgttacaggaatgctgcaaat
gcgtgtattgaagattcatttggatgggcttcaaacacgttccccgcatatgatccaaag
tcgagaagtggagtgaaagcaccgtctctggggaagcacaagctatccgcctcagacaca
cccaagtcctcaaagagcaaacagcgaaaactctcagcagcagaacaatcggaagtggca
tgggtgaggcgaaatgatcctaacctcaagttcgattttacacctgcggatagggaagag
gaggaagaggataaggaggtttcagaagagatagagatgataggttgtccacattggtat
gatcccttgttaacctcaggccttgatgattgctcattagcgtctgaaccctcaggaata
gagtag
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integrated database retrieval system
