Brassica napus (rape): 106452458
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Entry
106452458 CDS
T04128
Name
(RefSeq) symplekin isoform X3
KO
K06100
symplekin
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106452458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106452458
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452458
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106452458
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106452458
U7-dependent histone pre-mRNA processing factors
106452458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
106452458
NCBI-ProteinID:
XP_013731808
LinkDB
All DBs
Position
C2:complement(730811..739271)
Genome browser
AA seq
1450 aa
AA seq
DB search
MVGAIMAASSYSYSYSREKLQGLARSAKSATDLPPKLHRLRNLRRNLQGEASVFPAELLP
LLFDLLSDQFGAARKFVAQILGEVGLNYVELLPEIVPLFIKSLQDDTPAVVRQVIASASA
LFRSTLHKFALQGLHSSELDELLQSSWTWMLKLKDEICSLAFKQGNSGVKLCAMKFVEAL
ILLYTPDPSLSLDSQDLSIEASQKLGSLLDQLRHPAAKSLNSSTIIFLINSLSSVAKKRP
AYCGRILPVLLSLDAPSFLKGVHAAAANLALKTVFLSCLECTHPAAAPWKDRLIGALKEI
EGGSRAEKAEDLFYTTNGSIQDKDCVEDTKFQVSVEENSLRANSVVAESNFGRKRSGSEY
NIDLNGDALTGKRSRITPSVSGESTEGLNGNSVGSLPLVTSASTGPSNSRGVSDTGPVQQ
LVAMFGALVAQGEKAIGSLEILISSISADLLADVVMANMHNILLNGSSYADGTDELVMNM
SIVGSDAQIKYPPSFVAGVLSLSTAFPPVAALINPHTPKTENEGEELCVNHVDQPIFPAV
DAVIASGLSASSVNEEGNIELPPNVDYRGNIESGIPGLDSSAQRYVLSEAPVTSVLGSKN
VEAASKNQDTSASGELLLAVIPSVSVDKSEEFSPKATGIGSNSLVSSTATSLASAPQFLL
PKISAPVVNLSDEEKDSLQKLVFLRIVEAYKQVSMSGGSQLRFSLLAHLGVEFPSELDPW
KMLQEHILSDYLSHEGHELTVRVLYRLYGEAEAEQDFFSSTTAASAYESFLVAVAEALRD
SFPPSDKSLSKLLGDSPFLPKSVLKLLESFCCPESGDKVEKDLPSGDRVTQGLSAVWSLI
LTRPGIRNDCLKIALQSAVHPLEEIRMKAIRLVANKLYSLSFITQQIEEFAKDKLFSVVS
CISSERGGAETLSKDCVKPVSGEGMDSSLEATSVTEAQRCLSLYFALCTKKHALFVHVFS
IYKDASDPVKQAIHRQIPILVRTMGSSSELLKIIADPPNGSENLLMQVLQTLTEAAKPSS
ELIHTIRKLFDTRIKDVEIIFPILPFMTRDDVLRVFPHMVNLPMEKFQVALSRVLQGPSQ
SGPVLSPSEVLIAIHSIDPARDGIPLKQITDACNTCFAQRQTFTQQVLASVLNQLVQQIP
LPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCAQSTQPQSYKVL
LQLPPTQLGNALTKISSLRAPLAAHASQPDIQSSLPRSTLAVLGLVPDSQGTQTSQVQAS
ETQESQVQASETQESQVQASETQESQVQASETQESQVQASETQESQMQASETQECQGKQQ
ASESQEQTSPSQQVSVPLSHSETDHNQETSQVVASHSQSSPIATGRSETSQSQSSPIGAG
QSEVSQTTQVSDSDPPPAPTSHTQTSDSQVSGQRQPDNEKMEEDTATSENERSEVDKSKE
SSAEEEEEEE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggtgggagccatcatggctgcttcttcgtattcgtattcgtattcaagagaaaagctc
caaggtctcgcgagatccgccaaatcagccaccgatttgcctccgaagctccaccgcttg
cgcaacttgcgtcggaatttgcaaggagaagcctccgttttccccgcagagcttcttcct
ctccttttcgatcttctctctgatcaattcggtgctgcccgcaagtttgtcgcccagatt
cttggtgaggttggtttgaactatgtggagttattacctgagatagttccccttttcatt
aagtctctccaagatgacacccccgctgtcgtcaggcaggtcatcgcttctgcttctgct
ctcttccgctccaccctccataaattcgcacttcagggtttgcattctagtgagctggat
gagcttcttcaatcttcctggacatggatgcttaagctcaaggatgaaatatgctctttg
gctttcaagcaaggaaacagtggtgtaaagttatgcgctatgaaatttgtggaagcgctt
attcttttgtatacacctgaccctagcctgtctttggactctcaagacttgtccattgag
gccagccagaaattgggttcactgcttgatcagctcaggcaccctgctgctaaatctcta
aatagctccaccattatttttcttatcaatagtctttcatcagttgcaaagaaacgacct
gcatattgtggacgaattctgcctgttctactgagcttggatgccccaagctttctcaaa
ggagtgcatgcagcagcagcaaatcttgccctcaagactgtttttctctcctgcttggaa
tgtacacatccggctgctgcaccgtggaaagaccggttgatcggtgctctgaaagagata
gaaggtggcagtcgggcagagaaagctgaagatctgttttacacaactaacggaagcatt
caagacaaagactgtgtagaggatacaaagtttcaggtatcagtggaagagaattctctc
cgtgcaaattctgttgttgcggaaagtaactttggtaggaaaagatctggatcggaatac
aatattgatctaaatggagatgctttgactggaaaacgatcaagaataacaccttctgtg
tcaggagaatctactgaaggattaaatggtaacagtgttggctctctacctctggttact
tctgcttcaactggaccaagtaatagcagaggagtaagtgatactggacctgttcagcaa
ctggttgctatgtttggagcattggttgcccagggtgaaaaagcaattggatctctagag
atccttatttcaagtatttctgcggatctgctggccgatgttgtgatggctaatatgcat
aatattctactaaatggttcctcttatgctgatggcaccgatgagctggtgatgaacatg
tctatagttggtagtgatgcacaaattaaatatccaccatcgtttgtggctggtgttctt
tcactgtcaactgcattcccaccagttgctgccctgataaatcctcacacaccgaaaacg
gaaaatgaaggtgaagaactctgtgtgaatcatgtggaccagccgatatttccggctgta
gatgcagttattgcaagtggcttatcagcctcttcagtaaatgaagagggcaatattgag
cttccaccaaatgtggattacagagggaatatagaaagtggtatacctggactagattct
tctgctcaacgttatgtgttatcagaagcccctgttacttctgtattgggttcgaaaaat
gtggaggccgccagcaagaaccaagatacgagtgccagtggagaacttcttctcgctgtg
attccatcagtgtcagtggataagtctgaggagtttagtccaaaggcgactggcataggt
tctaacagcttggtttcctcaacggcaacttcacttgcttctgcgcctcagtttctcttg
cctaagatatcggcacctgttgtcaacctttctgatgaagagaaagacagtttgcagaag
ctggtgtttttacgcattgttgaagcatataaacaagtatcaatgtctggtggctcacaa
cttcgcttttctcttcttgctcacttgggagttgagtttccttcggagttggacccttgg
aaaatgttacaggaacacattctctctgattatttgagtcatgagggacatgagttgact
gtgcgggttctctacaggctatacggggaggcagaagcagaacaagatttcttctcgtca
actactgctgcgtctgcatatgaaagtttcttggtggctgtggctgaagcacttagagat
tcttttccaccgtctgataaatcgttaagtaaattgctcggagattctccatttctgcca
aaatcagttctgaagttgttggaatcgttttgctgtcctgaaagtggtgacaaggttgaa
aaggacttacctagcggagaccgtgttactcaaggcctcagtgcggtttggagtctgatt
ttaacgagacctggaatccggaatgactgcctgaagattgctttgcagagtgctgttcac
cccttggaagagattcgcatgaaagcaatccgcctggtggcaaacaagctctattcttta
tcattcattacacaacagattgaggaatttgcaaaggacaagctattttccgtagtgagt
tgcatttcttcagagagaggaggtgctgaaacgttgagcaaggattgtgtaaagccggtg
agtggtgagggcatggattcgtccttagaagcaacttcagtaaccgaagcccaacgctgc
ttgtcactctattttgcactatgtaccaagaagcacgccctttttgtccatgtgttcagc
atttacaaagatgcatcagatcctgttaagcaggctatccatcgtcaaatcccaatacta
gttcgtaccatgggctcatcatccgagcttcttaaaattatagcagacccaccgaatgga
agtgagaaccttctaatgcaggttcttcaaaccctcactgaggcggctaagccttcttca
gagttgatacataccataagaaagttgtttgatacaagaataaaggatgtagaaattatt
ttcccaatattgccgttcatgacaagagacgatgttctacgtgttttccctcatatggtc
aatcttcctatggagaaattccaagtcgcactctctcgtgtcctgcagggaccatctcag
tctggtccagtgctttctccatcagaagttttaattgctatccatagcattgacccagcg
agagacggaataccgcttaaacagatcacagatgcatgcaatacctgtttcgcacagagg
cagacattcactcaacaggttttagccagcgttctgaaccaactggtccagcaaattcca
ctgccaatgttattcatgcgtacagttctacaagctatcggtgcttttccagctctgtcc
gactttatcctggagatcctttctcgtctcgttagcaaacagatatggaaatatccaaaa
ctgtgggtaggattcttgaaatgtgcacagtcaacacagcctcaatcatacaaggtctta
ctacagcttcctccaactcagctgggaaatgcattgactaaaatctcatccttaagagct
cctctggcggcgcatgccagccagccagatattcagtcttcacttccgagatctacattg
gctgttcttggacttgtccctgattctcagggaacacagacgagtcaagtacaagcaagt
gaaacacaagagagtcaggtacaagctagtgagacacaagagagtcaggtgcaagcgagt
gagacacaagagagtcaggtgcaagcgagtgagacacaagagagtcaggtgcaagcgagt
gaaacacaagagagtcagatgcaggcgagtgaaacacaagagtgtcagggaaagcagcaa
gcaagcgagtcacaagagcaaacgagcccgtctcagcaagtctctgtacctctgagtcac
tctgaaacagatcataatcaggaaaccagtcaggtggttgccagtcattctcaaagcagt
cctatagctacgggccggtcagagacgagtcagtctcagagcagtcccattggtgcgggg
cagtctgaagtgagtcagaccacccaagtgtcggactcggatcctcctccagcaccaacg
agccatacccagacatcagattctcaagtgtcaggccagagacagcccgataatgagaag
atggaggaggacacagcaacctcagaaaacgagaggtctgaagttgacaagtcaaaggaa
tcttctgcagaagaagaagaagaagaagagtga
DBGET
integrated database retrieval system
