Brassica napus (rape): 106452513
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Entry
106452513 CDS
T04128
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106452513
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Other 90S particles
106452513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
UTP6_C
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
106452513
NCBI-ProteinID:
XP_013750112
LinkDB
All DBs
Position
C5:51287979..51300093
Genome browser
AA seq
1925 aa
AA seq
DB search
MVAPSKKVASGKRNDSTKVFKSSKKPFKKTKDDVAARSEAMALQLEDVPDFPRGGGTSLS
KTERKKIYEEVDAEFEAEERVSKRSKGGKPKMKRNPSEVDELGSLFDGGLTGKRPRYANK
ITIKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDI
FSVGQLVPCFVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQSGMVVTASVKSVEDH
GYILHFGLPSITGFIKKSKDGNQELKTGQLIQGVVTNIDKERKIVSLSADPDSVAKCVTK
DLSGMSFDLLIPGMMVNARVQSVLENGILLGFLMYFTGTVDLFHLQNPMCNKSWKDEYTQ
TKMVNARILFMDPSTRAVGLTLNPHLVGNKVPPLHVSSGDIFDEAKVVRVDKSGLLLELP
SKPVSTPAYVSTYDAAEDEVKKLEKNFKEGNRIRVRILGLKHMEGLAIGTLKESAFEGPA
FSHSDVKPGMVTKAKIISVDTFGAIVQFPGGLKAMCPLQHMSEFEVTKPRKKFKVGAELI
FRVLGCKSKRITVTCKKTLVKSKLPILSSYADATEGLVTHGWITKIEKHGCFVRFYNGVQ
GFVARFELGLEPGSDPSSVFHVGEVVKCRVTSAVHGTRRINLSFMIKPTSVSEDDSIKLG
SIVSGVIDSITPQAVTVHVKSKGLLKGTVSAEHLADHHDQAKLMISLLRPGFELDKLLII
DIDGNNLALSSKYSLIKLTEELPSDISQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAP
RSKAIDDPRADLSESFFVGQSVRANIVDINQEKSRITLSLKQSSCASVDASFIQEYFLTD
EKISDLQSSDNTESECSWVEKFSIGSLVKGTVHEQNDLGLVVNFDNIDNVLGFIPQYHLG
GATLEHGSVVEAVVLDISRAERLVDLSLRPELINNSTKEVSNNQSKKKRRRGISKELEVH
QRVSAVVEIVKEQYLILSIPEHGYTIGYASISDYNTQKLPVKQFSAGQSVVASVESLQNS
LTSGRLLLLLDSVSGISDTPHSKRTRNKSSCGVGSVVHAEITEIKPLEVRVNFGQSFRGR
IHITEVDDVSTSEEPFSKFRVGQSVSARVIAKPWHTNIKKSLWELSSKPAILRVDSSELN
GIQVREQLEFVNGERVRGYVYKVDKEWVWLTISRNVTAGVFILDTACDAQELEEFERRFP
IGKAVSGYVLTYNKEKKTAQLVQRPLLDIQKSIANGGGCKTDNLDNSIPGDDATLFIHEG
DILGGRISKILPGVGGLRVQIGPNVFGRVHFTEINDSWVSNPLDGFHEGQFVKCKVLEIS
NSSKGTLQIELSLRTSLDGMTSDQLSEASNNNVNICKRFERIEDLSPDMAIQGYVKNTMS
KGCFIMLSRKLDAKVLLSNLSDTFVKDPEKEFPVGKLVTGRVLNVESLSKRVEVTLKKGN
AGGQPKSESYDLKQFHVGDVISGSIKRVEPYGLFITIDKTSMVGLCHKSQLSDDRIEDVQ
ARYEAGESVTAKILKLDEEKQRISLGMKSSYFMNDDDVKAQPPSEENAKEDSMECDPIND
LKSGVLAAVGNFGFQETGSERQSGTSLVLAQVESRASIPALEVNLDDIEEAGFDNDQNEK
LQGVDKDEKSKRREKQKDKEERERKIQAAEGRLLENHAPESADEFEKLVRSSPNSSFVWI
KYMAFMLSLADIEKARSIAERALRTINIREEDEKLNIWVAYFNLENEHGSPPEEAVKKVF
ERARQYCDPKKVYHALLGVYERTEQYKLADKLLDEMVKKFKQSCKVWLRKVQSHLKQDVE
DIQSIVNRALLCLPRHKHIKFISQTAILEFKCGNADRGRSLFEGVLREYPKRTDLWSVYL
DQEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSAGDEERVEYVKQRAMEYA
DSTLA
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggtggctccgtcgaaaaaagttgcaagtggaaaacgtaatgactctactaaagtattc
aagtcatcgaagaaaccgttcaagaagacgaaggacgatgtcgctgcaaggtctgaagcc
atggctctccagctcgaagacgttcctgactttcctcgagggggaggcacttctctgagc
aaaacagagcgtaagaaaatatatgaagaggtcgacgctgagtttgaagctgaggagcgt
gtttccaagaggagtaaaggaggtaaacctaagatgaagagaaaccctagcgaggttgac
gaattaggatctctttttgacggtggtttaactggaaaacggccaagatatgccaataag
attaccattaagaatatctctccgggaatgaagcttcttggagttgttactgaagtaaac
cagaaggacatagtaattagtcttccagggggattacgtggactggttcgcgcaagcgag
gccttggattttacggatttcggaacagaggacgatgaaaatgaactccttcgagacatc
ttttcggtgggccagcttgttccttgctttgtattgcagttagatgatgataagaaggag
gcgggcaaaaggaaaatatggctttcgttgcgactttctttgttgcacaagggattcagt
ttggattcctttcagtcgggaatggtagtcactgcaagcgtgaaaagcgtggaagatcat
ggttatatccttcactttggattgccttctatcacaggatttatcaaaaaaagcaaagat
ggaaatcaagagttaaagactgggcaacttattcagggcgtggttacaaatattgataaa
gaacggaaaattgtttctcttagtgcggacccagattcagtggcgaagtgtgtgaccaag
gatcttagtggtatgtcgtttgatcttctcataccaggcatgatggttaatgcccgtgtg
caatctgtacttgagaatgggatactgttaggatttcttatgtactttactggaacggtt
gatctattccatttacaaaatccaatgtgtaacaagagctggaaggatgaatatactcag
actaagatggtcaatgctagaatattgtttatggatccatcaactagagctgttggtttg
acgttaaacccacatcttgttggtaacaaggttcctcctttgcatgtctctagcggagac
atatttgatgaagcaaaagttgtccgtgttgataaatcaggccttcttcttgaactccct
tctaagcctgtttcaactccagcatatgttagcacttatgacgcagcagaagatgaagta
aagaaactggaaaagaatttcaaggaaggaaaccgcatccgtgttcgaatcctcggcctt
aagcatatggaggggttggcgatagggactttaaaggaaagtgcttttgaagggccagct
ttctcccactcagatgtcaagcctggtatggtgacgaaggcaaaaatcatatctgttgat
acatttggtgccattgtgcaatttccgggtggtttgaaagcaatgtgcccacttcagcat
atgtctgagtttgaagttacgaagcccaggaaaaagttcaaggttggagctgaactaata
tttcgggtgcttggctgcaaatcaaagagaataactgttacatgcaagaaaacacttgtc
aagtctaaacttccgattttgagttcttacgctgatgcaactgaaggattagtgacacat
ggctggataacaaagattgaaaagcatggatgctttgttcgcttctataatggggtgcaa
ggatttgttgccagatttgaacttggattagagcctggtagtgatcccagttcagtgttt
catgtcggggaggttgtcaaatgcagagtaaccagtgctgttcatggtactcgaaggatc
aacctcagctttatgataaaaccaacaagtgtttctgaagacgattccatcaagttaggt
agtattgtatctggggtaattgatagtataactcctcaggcagtcactgtccatgttaaa
tccaaaggtttgctgaagggtacagtttctgctgaacatttagctgatcatcatgaccaa
gcaaaactaatgatatcccttctaagacctggatttgagcttgataagctgctgataata
gacattgacggcaataacttggctctctcttcaaaatattctctgattaagcttactgaa
gagcttccttcggatattagtcagctccagccaaactcagtggttcatggttatgtttgt
aacttgattgaaaatggctgctttgtccgttttctgggtcggttgactggtttcgcccct
agaagcaaggcaattgacgatcccagggcagatctgtctgaatccttctttgttggacaa
tcggttcgggctaatatagttgatatcaatcaagaaaaaagcaggataactctttcattg
aaacagtcatcttgtgcttctgtagatgcttcttttatccaggagtacttccttacggat
gagaagatctcggacctgcagtcatctgataatactgaaagtgaatgtagttgggttgag
aaattctctattgggagtttggtcaagggaaccgtacatgagcaaaatgaccttggtttg
gtggtgaattttgacaatattgataacgtgcttggttttatacctcagtatcatttgggc
ggagctactttggaacacggttctgttgtcgaagcagttgttcttgatatatctagggca
gagagactagttgatttgtctttgcggcctgagctcataaacaactcaaccaaagaggtg
tccaacaaccagtccaaaaagaaacgtagaagaggtatttccaaggaacttgaagtccac
caaagggtcagcgctgttgtagagattgtgaaggagcaatacctgattttgtcgattcca
gaacatggttacactataggatatgcgtcaatatcagactataacacacagaagttacca
gtgaaacaattttcagctggacaaagtgttgttgcgtctgtggagtctctgcaaaactct
ttgacgtcggggaggttgcttctacttcttgactctgtttcgggtatttctgatacaccc
cattcgaagaggacaaggaataaatccagttgtggggttggttctgttgtccacgccgag
attactgaaataaagcctttggaagtaagagtaaactttggccaaagtttccgaggaaga
atccacataacggaggtggatgatgtaagtacaagtgaagaacctttttccaaattcaga
gtcgggcaatcagtgtctgcaagggttattgcaaagccctggcatactaatatcaaaaag
agtctttgggagctttcttcaaagcccgcaatacttagagtagactccagtgaattgaat
ggcattcaagtgagggaacaacttgagtttgttaatggagagcgtgtcaggggatacgtc
tacaaagtggataaagaatgggtttggctgacaatatctcgcaatgtgacggccggcgta
ttcattttagacactgcatgcgacgctcaagaacttgaggagttcgagaggcgttttccc
atcggtaaagctgtttcaggctatgttttgacgtacaataaagagaagaaaacagcacag
ttggttcagcgtccactacttgatatccagaaaagcattgccaacggtggaggctgtaaa
acggataatctagacaatagtattcctggtgatgatgctactctattcattcatgaagga
gacattcttggtggaagaatttctaagatacttcctggtgttggtggacttcgtgtgcaa
ataggtcctaacgtgtttgggagagttcattttactgaaatcaatgattcatgggtctcc
aatccattagatggttttcatgaaggtcagtttgtcaagtgcaaggtcttggaaatcagc
aattctagtaaagggactttgcaaattgaattgtcgttacggacatctctagatggtatg
acttctgaccaactctcagaagcttcaaataataatgtcaatatatgcaaacgttttgaa
aggattgaagatctttctcctgatatggccatccagggttatgtcaagaatacgatgtca
aaaggttgttttattatgctttcaaggaaactcgacgcgaaagttctattgtcaaattta
agtgatacttttgtcaaggatcccgaaaaggagtttccagtagggaaacttgtaactggc
agggtgttaaatgtcgagtcgttatccaagcgggtagaagtcactctgaagaaaggaaat
gcgggtgggcaaccaaaatctgaatcttatgatttgaagcaattccatgttggagacgtg
atatcagggagcatcaaacgagtggagccctatggcttattcattacaatagacaaaacg
agcatggttggattatgtcataaatcacagctttctgatgatcgtatcgaggatgtacaa
gccagatatgaggctggggaaagtgtcaccgcaaagattttgaagttggacgaggaaaag
caacgtatatcgcttgggatgaagagttcttattttatgaacgacgatgatgtcaaggca
cagccaccttctgaagaaaacgctaaggaagacagcatggaatgtgatccaatcaatgat
ttgaagtcgggagttcttgcagcagttggtaatttcgggttccaggaaacaggttctgaa
agacagagtggaacttctctggttcttgcccaagttgaatcaagggcttctatccctgcg
cttgaggttaaccttgacgacattgaggaagcgggatttgacaatgatcagaatgagaag
ctacagggagtcgataaagatgaaaagagcaagagaagggaaaagcagaaagacaaagaa
gaaagagagagaaaaatacaagctgctgaaggaagattgctggagaatcatgctcctgag
agtgctgatgaattcgagaaattggttagaagctctccaaatagcagctttgtctggatt
aagtatatggcgttcatgctcagtttggctgatattgagaaagccaggtccatcgctgag
agggccttgaggactataaatattcgtgaagaagatgagaagctaaacatatgggttgct
tacttcaatttggaaaatgaacatggaagtcctccagaggaagctgttaagaaagttttt
gaaagagcacgtcaatactgtgacccaaagaaagtttaccacgctctcttgggcgtatac
gagagaacagagcaatataaattggctgataagctgcttgatgagatggtcaagaagttc
aagcaatcttgcaaggtttggttaagaaaagtacaaagtcatctgaagcaagacgtggaa
gacattcagtccatcgtgaatcgtgccttgctatgtcttccgcgccataagcacattaaa
ttcatatcacagacagctattcttgagttcaaatgcggaaatgcagacagagggagatca
ctttttgaaggcgttcttagggaatacccaaagagaacagacttgtggagtgtttatctt
gaccaggagattcggttgggagaagttgatgtgattagatctttgttcgagagagccatt
agcttgagtttgcctcctaagaagatgaagtttctgttcaagaagttcttggaatatgag
aaatctgctggtgacgaggagagagtcgagtacgtgaagcaaagggcaatggagtatgca
gacagtaccttggcctga
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