Brassica napus (rape): 106452755
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Entry
106452755 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106452755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106452755
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106452755
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106452755
Complex B
106452755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
106452755
NCBI-ProteinID:
XP_013750380
LinkDB
All DBs
Position
C5:52691058..52694486
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AA seq
908 aa
AA seq
DB search
MEENERSKSRKEDYEMKAKNRRDRYRDRGKDQKKGNGSEKNRRKRRCERVMSIDSEDVCD
RYVGXRREKPKEKDKDRRRSRSDRFKSGTEEKGRRYREHGRNRGKDRKIDREGNEESGDD
VKRDLKRGRQEDNDEKKXEDGVKQLDEEAEKRRRRLHEWQELKKKKEEAESESKSWTLEG
DSDDDQGPPHGGDAYKMVDAVSENEEVIDPLHAFMNTMVLPEVEKLSNAAASPLGTVLDS
NMDVDNKARGWIIQGEDSDYSETKDDDDQPSLDKGDEVFMKTLKKTKGDKLTLVDHSNIE
YQPFRKNFYIQVKDISNMTEQEVNTYRKELEIKVHGKDVPRPIKSWHQTGLTTRILNTIK
KLNFQNPTPVQAQSLPIIMTGRDCIAVAPTGSGKTLSFVLPMLRHIKDQPPVEPGDGPIG
LVMAPTRELVQQIHTDIKKFGKSLSIRSAAVYGGSGVAQQISELRRGTEIIVCTPGRMID
ILSTNSGKVTNLQRVTFLVMDEADRMFDMGFEPQITRIIQNIRPEHXATFPRQVEALARK
VLNKPVEIQAGGRSVANKDITQFVEIKLESEKRPRLVELIEEWYDKGKVLVFVGSQEKCD
GLYNDLKNKCGYRCQSLHGGKDQIHREVAVSEFKSSVCNLLVATSVAARGLDVKGVELVV
NFDAPNHYEEYVHRVGRTGRAGRKGCALTFVSEDDAKYAPDLVKALERSEQVVPDGLKAM
ADGFMERVREGVEKGHGSGFGGSGFKFNDEEDVRRAAKEAQKKEDGVEEEDKSELEDVNG
GGEISQQKQQATMVVAAMLRGCARTRQQYEAELEINDFPQNARWKVTRRETLGSISDWSG
AAITTRGQFFTPGRSPGPGERKLYLFVEGPSEESVKAAKGELMRVVNDVTNQALSFPGRS
QHGRYSVL
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaacgagagatctaaatccaggaaggaagattacgaaatgaaggcgaagaat
cgccgagatcgttaccgtgatcgcggtaaggaccagaagaaggggaacggttcagagaag
aaccggcgcaagagacggtgtgagagggttatgagtattgattcggaagatgtttgcgat
cgatacgttggttaacggagggagaagcctaaagaaaaggacaaggatcggagacggagc
cgttctgataggtttaaaagcggaacggaagagaagggaagaagataccgagaacatggg
agaaatagaggtaaagatcgtaaaatagatagagaaggcaatgaagagagcggtgatgat
gtcaagcgtgacttgaaacgtggaagacaagaggacaatgatgagaagaagntagaggat
ggggttaagcagttggatgaggaggcagagaaacgtaggagaagattacatgagtggcaa
gaactgaagaagaaaaaggaggaagccgaaagcgaaagcaagtcttggactctcgaagga
gattctgatgatgaccaaggccctccccatggtggtgatgcttataagatggtagacgct
gtctctgagaacgaagaggtaattgatcctttacatgcttttatgaataccatggtttta
cctgaggttgagaagcttagcaacgctgctgcttctcctctaggtactgttttggactct
aacatggacgttgataataaagcccgtggttggataatccaaggtgaagattctgactat
tcagagacaaaggatgatgatgatcaacctagtttggacaaaggagacgaggtcttcatg
aagacactaaagaagacaaaaggagataaactaactcttgttgaccattcaaacatagag
taccaacctttccgtaagaacttctacatccaagtgaaagacatctcaaacatgacagaa
caagaagtcaacacttacagaaaagaactagagataaaagtccacggaaaagacgtacca
agacccatcaaatcatggcaccagaccggcctaaccaccagaatcttgaacacaatcaag
aaactaaacttccaaaacccaactcctgtccaagcacaatccctcccaatcatcatgacc
ggtcgagactgcatcgcagttgcaccaaccgggtcaggcaaaaccctcagcttcgttcta
ccaatgctaagacacatcaaagaccagcctcccgtcgaacccggcgacgggcccattggg
cttgtaatggcaccaaccagagagctagtccagcagattcacaccgatatcaaaaagttt
ggtaagtcactgagtatcagatcagcggcagtatacggaggttcaggagttgctcagcag
atcagcgagcttaggcgagggactgagataatagtctgcactcctggtagaatgattgat
attctctccacaaacagtgggaaagtaaccaatctccaaagagtaacgtttcttgtaatg
gatgaagctgaccgtatgttcgacatgggcttcgagcctcagatcactcgcattatccaa
aacattcgaccagaacacnccgcaactttcccacgtcaagtcgaggctttagctcgcaaa
gtcctgaacaagcctgttgagatacaggcgggcgggaggagcgtcgcgaataaagatata
actcagtttgttgagatcaagttagagagcgagaagaggcctaggctcgtggagcttatc
gaggaatggtacgataaagggaaggttttagtctttgttggttcacaggagaaatgcgac
ggtttgtataacgatttgaagaataaatgtggttaccgttgccaatctctccacggaggg
aaagatcagattcaccgtgaggtggctgtttctgagtttaagagcagtgtttgtaatttg
ctggttgctactagcgttgcggctagaggtttggacgtgaagggggttgagttggttgtg
aactttgacgctccgaatcattatgaggagtacgtgcatcgcgttggtaggacggggagg
gcggggaggaaggggtgcgccttgacgtttgtgtccgaggatgatgccaagtacgcgccg
gatttagttaaagctttggaacggtctgagcaggttgttcctgatggtttgaaagcgatg
gctgatggttttatggagagggtgagggaaggtgttgagaagggtcatggaagtggtttt
ggcgggagtggttttaagtttaatgacgaggaggatgttaggagagcagcgaaggaggcg
caaaagaaggaggatggtgttgaggaagaagacaagtctgagttggaagatgtgaacggt
ggtggtgagatctcacagcagaagcagcaggctactatggttgttgctgctatgctgcga
ggttgtgcaaggactcgacaacagtatgaagctgaactggagataaatgatttcccacag
aatgctcgttggaaggtgacgcggagagagactcttggttcgatatcggattggtctgga
gcggctattactaccagaggtcagtttttcacgccgggacgtagcccgggccctggggaa
cgcaagctttacttgtttgttgaaggacctagcgaggaatctgttaaggcggccaaaggt
gagctcatgcgtgttgttaatgacgttactaatcaagccttgtcgtttcccggaagatca
caacatggtagatactccgtcttataa
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