Brassica napus (rape): 106452760
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Entry
106452760 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106452760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452760
03041 Spliceosome [BR:
bna03041
]
106452760
03009 Ribosome biogenesis [BR:
bna03009
]
106452760
03016 Transfer RNA biogenesis [BR:
bna03016
]
106452760
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106452760
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106452760
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106452760
Complex C
U4/U6.U5 tri-SnRNP related factors
106452760
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106452760
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106452760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
106452760
NCBI-ProteinID:
XP_013750386
UniProt:
A0A078HXY9
LinkDB
All DBs
Position
C5:complement(52676016..52681064)
Genome browser
AA seq
991 aa
AA seq
DB search
MSTIMESPETLGKRKASESSKLSDETPTTKRRSSQKRACVHEVAVPNGYTPTKEEAIHGT
LDNPLYNGDMAKTYPFQLDPFQSISVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPLKALSNQKYRELQHEFHDVGLMTGDVTISPNASCLVMTTEILRAMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ
PCHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREANFIKMHDTFPKPKSEGKKSAN
GKSGGRGGAKGGGGGGGGGDSDVYKIVKMIMERKFQPVIIFSFSRRECENHALSMSKLDF
NTEEEKSTVEEVFNNAMLCLNEEDRSLSAIEMMLPLLQRGIAVHHSGLLPVLKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEQMEMDVLKDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIKHSF
HQFQYEKALPDIENKVTKLEEEAAILDASGKAEVAEYHKLKLDIAPLEKKLMSEIIRPER
VLCFLDTGRLVKIREGGTDWGWGVVVNVVKKTSVGTSSQGGGYIVDTLLHCSTGVSENGA
KPKPCPPRPGEKGEMHVVPVQLPLITALSRLRISVPSDLRPLEARQSILLAVQELSSRFP
LGFPKLHPVKDMNIQDTEIVGLVSQIEEAEQKLLAHPMHKSEDDQQMKSFQRKAEVNYEI
QQFKSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIPVDKSNEKVELRNELNRPLQQLKDNARKIAEIQHECKLE
IDVEEYVESTIREGLMDVIYCWSTGSTFAEVMNKTDIFEGSIIRSARRLDEFLNQLRLAA
EAVGENNLASKFAAASESLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaataatggaatcaccggagacactcggcaagaggaaagcatccgaaagctca
aagctttctgatgagacccccacgacgaagcgcagaagcagccaaaaacgagcttgcgta
cacgaagtcgccgtccccaacggctacacgccaacgaaagaggaagcgattcacggaact
ctcgataaccctttgtacaacggagacatggccaaaacctaccctttccagctcgaccct
ttccagagcatctccgtagcgtgcctggagaggaaagaatcgatcttggtctctgctcac
acttcagctggtaaaacagctgttgcggagtatgctattgccatggcgtttagagataag
cagagggtgatctacacttcccctctgaaagcattgagtaaccagaagtatagagagctc
cagcacgagtttcacgacgttggtttgatgaccggtgacgtcacgatctcccctaacgct
agttgcttggtgatgaccacggagattttgagagcgatgctttatagaggctctgaggtt
ttgaaggaggttgcgtgggtgattttcgacgagattcattatatgaaggatagggagaga
ggggttgtttgggaagagagtattattttcttgccgcctgctattaagatggtttttctc
tcggccacgatgtcgaatgctactgagtttgctgagtggatttgctatctgcataagcag
ccttgtcatgttgtgtatacagactttaggccgacgcctctgcagcattatgcttttcct
atgggtgggagtgggctttaccttgtagttgatgagaatgagcagtttagagaggctaat
ttcattaagatgcatgatactttcccaaagccaaaatctgaggggaaaaagagtgcaaat
ggcaaatcaggtggtaggggcggcgctaaaggtggtggcggcggcggcggtggtggtgat
tctgatgtttacaaaattgtaaagatgatcatggaaagaaagtttcaaccagtcatcatc
ttcagcttcagtagaagggaatgtgaaaatcacgcactgtcaatgtcgaaactcgatttt
aatacagaggaagagaagtcgactgtggaagaggtgttcaacaatgctatgctgtgcctg
aatgaggaggatagatctttgtctgccattgagatgatgttgccactgctccaacgtggt
atcgctgtccaccattctggtcttctccctgtcctcaaggaattagtggagcttcttttt
caggaaggacttgtaaaagcgcttttcgccacggaaacttttgctatgggtttgaacatg
cctgcaaaaactgtagtgtttactgctgttaagaagtgggatggtgacagccatcgtttc
attgggtctggtgaatatatccagatgagcggcagggctggacgtcgtggaaaggatgaa
cgtggtatctgcattattatgattgatgaacagatggaaatggatgtactcaaggacatg
atgctgggcaaaccagcccctttgcttagtacttttaggttgagttactacacaattttg
aatctattgagtcgtgccgaaggacaatttacagctgagcatgttataaagcactcgttc
caccaattccaatatgaaaaggctttaccggatattgagaataaggtgaccaaacttgaa
gaggaagctgccatccttgatgcttctggaaaggcggaggttgctgagtaccataagcta
aaacttgacatagctccactggaaaagaaacttatgtcagagataataaggcctgaaagg
gtgctttgttttcttgatactggtcggctggttaagatacgagaaggtggaacagactgg
ggatggggagttgtagttaatgttgttaaaaaaacttcagttggaacctcttcacaaggt
ggcggatatatagtggatactcttcttcattgctccactggtgttagcgagaatggtgca
aagccaaagccgtgtcctccccgtcctggggagaagggtgagatgcatgtggttcctgtt
cagctaccattaattactgctttgagcagactaagaatatcggttccgtctgatcttcgg
ccactagaagcaagacagagcatactactggcagtacaggagttgtcgagtcgcttcccg
ttagggttcccaaaactccatccagtcaaggacatgaatattcaagatacagagatagtg
gggctggtcagccaaattgaagaagctgagcagaagttacttgctcatccgatgcacaag
tctgaagatgatcagcaaatgaagagtttccagagaaaagcggaggtgaattatgaaatt
cagcagttcaagtcgaaaatgcgtgattcccagcttcaaaagtttagagatgagcttagg
aaccgttctcgggtattaaagaaacttggacacattgatgctgatggtgtggtccagtta
aagggacgagctgcctgcttgatagacacaggggatgaactgcttgtcactgaactgatg
ttcaatggtacttttaatgatctggatcatcaccaagtagctgccctcgcaagctgtttc
attcctgtagataaatcaaatgaaaaggtagagctaagaaatgaacttaatagaccgttg
cagcagctcaaagataatgcacggaaaattgcagagatacaacatgaatgcaaactggaa
atagacgttgaagagtatgtagaatccaccatcagggaaggcctaatggacgttatctac
tgttggtcaacgggttcgacctttgcagaggttatgaataagactgacatattcgaggga
agtatcattaggagcgctagaaggctcgacgagtttctgaaccagcttcgacttgcagcg
gaagcagttggagagaataatttggcgagcaagtttgcagctgctagcgagagcttgcga
agaggtattatgtttgcgaattcgctttatttataa
DBGET
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