Brassica napus (rape): 106452786
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Entry
106452786 CDS
T04128
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20-like isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106452786
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106452786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Utp13
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
106452786
NCBI-ProteinID:
XP_013750413
LinkDB
All DBs
Position
A3:29274109..29286830
Genome browser
AA seq
2647 aa
AA seq
DB search
MATPADARAVKSLNTSGGRKKFVFKNLAQKVNEIDISGFFKSLEKVKPEPSEGSSFFRDC
LVELRELNTAEDFISFYEEMLPFVQTLPLVIEQKEIIFTKLVSRLQMDARLSLDAILRLI
AALSRDLLEDFIPFLPRIVNSLVALLENGAKKDADIIKQIFSSWCEILMNLQKYLVRDIE
GILRDTLDLRYHPKDYINELMSESMSFLLRNARNEQLEKGINRILSEVADPAKQDGAVDL
LYYAMRGTSGSLHSKAGRVLSFLLKDSTLSFCDNSPQGPGTVVEVVSSTLERLCEDLEAD
KLNVMWKCLIQEINESIKNKNSVHLSRLLSVLTAAVRVQKGLKVHDYPSLIRLVGLTVST
FVASSETVVEGDNLSAVIDEVLQLMLSTINRVTDLETVASQWAPIFAMKSSSLLTFLEEL
LNKDQSVVKAFTNNILSAINNMIWESPEEVIPLLLTFCENQQTSHDRVIIVDQTFERIHK
FLEEKIKKVRQNVENTGLSQADDAELAAIWGVVNCYPYFKVDPSLLISFKDTLRQYLTVS
DANTFSTPELKWQSLLGAALSSCHKLPRRINHNDIEEALSMAKDYKSCVQVLTPVADFLD
SMHRLALANDDSSKPQPELQEEKAKDAFGIFSENLRHPNKCIRLMTLRILCHFETFSSDS
SFEEHPPKKKMKTEETKKPLHKRNVLELLRSIQEIVPTVNTEGELISMIHEIKRNLSAGL
VHAAYVQLVLNGLMGIFHISYTKLWGPASECLEVLLRNHTVAVWSDFVCYLDQCQLKSEK
LDNHSENPNHNLSERPTDLIGRFNLFLYPPSNSTATATVATQLLQTLQKAPKVAQSRASE
ILPRLLKFLGYNIENPTSVGLFNAPVCKGDDWRNVLKQWLTLLKLMKNPKSFQFSEFLNN
VLQNRFLDDNDTELQTIVLECLLLSNDFLLPHREHLLKLIKPEELREELTTSNMSVDIEE
AHRSLLFSLEIRILAPKVRTLKNLASRKHTSINHRKAVLRFIAERDVNDLSLFFVLLIKP
LNIISEETMDLFWSSGKSSLDYFQKADFLKDFTGDTISTLSKNQKSGFLHVIQDILEVFD
ELRVRPFIDFLMGCVVRLMVNYEERNTESLTPRNDTAASSTPDNKQNVSVHQDQAGTALK
QFKELRSLCLKIIAHVLDKYEDSDIGSEFWNLFFSAVNPLIKNFKQEGSSSEKTSSLFSC
FLSMSRNRNLVTLLCREESLIPDICSILTVTTASDAIKSSALKFIENLLCLDSELHEDDS
MIKGFLDPYVETLFSSLHSLFIGDINKRKSVKYHGEREVRILKLLSKHMGDQSCAMKYLE
VLLSFLDKNVKDSDIRREALLAIQDIISLLGTESVTKIINKVSPLLVDAEVDVRLCICDL
LESLAKIDFSLDDVAKRIRDMNSISAMEVDDLDYERIANAYVEIDSDFFAKSSKQHTMII
LSQSLYNLSSESIMIRGSAHKLLSSFIEFSASILCQEASAHSGVGKEVKIADASWTGKHT
LSIVDFILKHIADAISRGGNIVKEWILLIREMVTKLPDAGNLGAFRPLCSEDENLDFFKS
IIHIQSHRRSKAISRFAKLVGDSSLPEGVLRKLFVAVFFHMLLDGQDVKEKENNVRNACT
EALASVSAHMSWKSYYALLNRCFREMHNHTKKGKLLLRLICLILDKFHFTEDGGYRQEEI
EGIHKSLQTVFGKMQKLMDSESDNVNVNSSVAALKVLKLLPKDVMDDYLSPIIKRIATFT
KNRLESTRDEARSALVACLKELGLEYLQVVIKSLRDILKRGSELHVLGYTVHSILSKCLS
KPTCGKLDHCLDDLLAVVENDIFGEVAEQKDVDKFKSKMKETRKRMSFESLKLICENVTF
REHALKLLSPVTSQLRRHLTPKIKSNLEKMLQQIAVGIEGNPSVDQVDLFVFIYGRVDDG
INNRNGPGDQGSSPPSQKKGKSRDRQETAGLISGTRSCPHLITVFALDLLQNRLKKIKLD
NTDKQLLGKLDSFVKLLTECLRSKYEEIVSSALRCFTSLIWFPLPSLISEADELKTALLT
IAQSAVNSSSPLVQSCLKLLTTLLGNKNITLSPEQLKLVIQFPMFVDLESDPSFVNLSLL
KAIVKRNLVVPEIYDVAVQVSELLVKSQQESIRKKCKQILLQFLVHYTLSEKRLQQHVEF
LLQNLKYEHPSGREAVLDMLHTLILKFSVPNLGKKSFLDQQSKTMFIQLAMCLGNDIDQK
VLPRIGSVIELLIGCISEDQVGTILSYCLCWYKQQRLQAVAAQVLGFIIDSMEKSFRKHI
HNTLEDAKVIMKSAVSASSLHNAEEGVIPFWKEAYYSLVMIEKMVRQFPDLKLKEDLEDI
WKMVFKFLLYPHAWLRSISRRLLNYYFKALARRKRAESQTVVSDSLLENPSSLFSVAVSL
CSQLKELPTTGDVNVDLLVENIVFAVSSLHSLIGHSVQAKDNGFWSGLGEDEQVVFLKAF
EVLDSGKGRSTFLSLTSGKRTENGEEDDAASGVRNVLIGSLLKRLGKVALDTESVQMKIV
FNVYKAFTSQMNQDDCRLYAFKILLPLYKVCEGFTGKIISDESKQLAEEVRDSIRDKTLG
NQLFVEVYSEIRKSLRNKREKRKREEKTMAVVNPERNAKRKLRLASKNKANKRRRMTSMK
LSRWARS
NT seq
7944 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccagctgatgctcgggcagtcaagtcgctcaacacttccgggggacgtaag
aaattcgtgttcaagaatctcgctcagaaagtcaatgagattgacatcagcggtttcttt
aagagcctggagaaggttaaacctgagccttcagagggttcttcgtttttcagagactgt
ctcgttgaattgagggaactgaatacagcagaagatttcatttcgttttatgaagaaatg
ttgccatttgttcagactttgcctttggtcattgagcaaaaagaaataatcttcaccaag
cttgtctctcgattacaaatggacgcaagattgtccctggacgccattctcaggttgatt
gctgctttatcaagagatctcttggaggactttatccccttccttccacggatcgtgaac
tccttagtggcactcctagaaaatggtgccaagaaagacgcggatattatcaagcagata
ttctcttcatggtgcgagatattaatgaatctgcagaagtatctcgtacgcgacatcgaa
ggtattctcagggatacgttggacttgaggtatcatcctaaagactatatcaatgaatta
atgtcagagtctatgtcctttttgttgaggaatgcgcggaatgagcaacttgaaaaaggg
atcaacaggatcctttccgaagttgcagatccagccaaacaagatggagcagttgattta
ctttattatgctatgagaggaacctctggaagtctccactcaaaagccgggagagttttg
agtttcttgctgaaagattcaacattatctttttgtgataattctcctcaaggccctggt
acagtcgtggaagttgttagttccactttggagagattatgcgaggatttggaagcagac
aaattaaatgttatgtggaaatgcttgattcaagaaataaatgaatcgatcaaaaacaaa
aactccgttcatttaagccgactgttgagtgtgcttactgcagctgtcagggttcagaaa
ggtctcaaggttcatgattacccatctttgattcgacttgtgggcctcactgtctcaact
tttgtggcttcctctgagaccgttgtagaaggggataacttatctgctgtcattgatgaa
gttctacaactgatgttaagcacaataaacagagtcactgatttggaaactgttgcttcg
caatgggctcccatttttgccatgaagagttcaagtttgctgacttttttggaggagttg
ttgaacaaggatcaatccgtagtgaaagcctttacaaacaatatattaagtgcaattaac
aatatgatttgggagtctcctgaggaagttattcctctgttactgacattttgcgagaac
caacaaacaagtcacgacagagtgatcatcgtagatcaaacatttgagagaattcataag
tttttggaagaaaagattaagaaggttcggcagaatgtagagaacactggattatctcaa
gctgatgatgccgagttggctgccatctggggagttgtcaactgttatccttatttcaaa
gtggatccatcattactgatttcctttaaggatactctcagacagtatttgacagtgtcg
gatgcaaacacgtttagtaccccagaattgaagtggcagagcttacttggtgctgcttta
agttcatgtcacaaactgccgagaagaatcaaccacaacgatatagaggaagcgttgtct
atggcaaaagattacaagtcatgcgtacaagtgttgacccccgtggccgattttttggac
tcaatgcacaggcttgcattagctaatgatgacagttctaagccgcaaccagaacttcaa
gaagaaaaggctaaagatgcttttggcatattttcggaaaatctgcgccacccaaacaaa
tgcatccgtcttatgacgctgaggattttgtgccattttgagacattttcgtccgactcg
tcttttgaagagcatcctcccaagaagaaaatgaaaactgaggagaccaaaaaacccctt
cataaaaggaatgttcttgagttattacgctcaatccaagagattgttcccacagtgaat
acggagggggagttgatcagtatgattcatgaaataaaaaggaatctctctgctggcttg
gtacatgcggcatatgtgcagctagtattgaatgggctgatgggaatatttcatattagt
tatactaagctgtggggtccagcatctgagtgtcttgaggttcttctgaggaatcacaca
gtagctgtgtggagtgattttgtttgctatttggaccagtgccagctaaaatctgagaaa
ctcgacaatcatagtgagaatccgaaccacaacttgtcagagaggcctaccgatctgatt
ggccgttttaatttatttctctatccgccgtctaatagcacagctactgcaacggtggct
acgcagttgctccagaccttgcagaaagctcccaaagttgctcagtcccgtgcttctgag
attctccctcggttgctgaagtttctgggatacaacattgaaaatcctacgagtgtcgga
ttgttcaatgcgccagtttgtaaaggagatgactggaggaatgttcttaaacagtggttg
actttgctgaaattgatgaaaaatcctaagtcgtttcagtttagcgaatttctaaacaac
gttctgcagaatagattcctggacgataatgatactgaactacaaaccattgttctagag
tgccttctgttgtcgaacgacttcttactcccacaccgcgagcatttgttgaaactgatc
aaaccagaggaattaagagaagaactcacaacctcgaacatgtccgtagacattgaagaa
gctcacagatctcttcttttctctcttgaaattcgaatccttgcgccaaaagtcaggaca
ttaaagaatttggcttcacggaagcatacaagtataaatcataggaaggcagttcttcgc
tttatagctgagcgggatgttaacgacctttccctcttctttgtattgttgataaagcct
ttgaacatcatatcagaggaaacaatggacttgttctggagttcaggcaaaagttcgctg
gattatttccaaaaggcggatttcttaaaggatttcactggtgatactatttctacatta
tccaagaatcagaaatctgggtttcttcatgtcatccaagacatccttgaagtctttgat
gagctccgtgtccgaccttttatagactttttgatgggatgtgttgtccggctaatggta
aactatgaagaaagaaacactgaatcattgacaccaagaaatgacactgccgcctcatca
acaccagacaataaacagaatgtttcagttcatcaagaccaggctggcactgctttgaag
cagtttaaagagttgagatccttgtgtctgaaaattattgctcatgttcttgataaatac
gaggattctgatattggttccgagttctggaacctcttcttttcggcagtaaatccgtta
atcaagaatttcaagcaggagggttctagtagtgagaaaacaagttccttgttctcatgc
ttcttgtcaatgagcagaaaccgcaatctcgtgaccctcttatgtcgggaagagtctctt
attccagacatttgttcgattctgacagtcaccacagcttcagacgctataaagtcgtct
gcactgaagttcatagagaatctgctttgtcttgacagtgagttgcatgaggatgacagt
atgatcaaaggcttcttagatccgtacgtagaaacactgttcagcagcttgcattctctt
ttcatcggggatattaacaaaaggaaatcagtcaagtatcatggggaaagagaggttagg
attcttaaattgttgtcaaagcacatgggagatcagtcttgtgctatgaagtatttggaa
gtcttactttctttcttggataaaaacgtgaaagattctgatatccgtcgtgaagcttta
ctagctattcaggacatcatatcgttgcttgggactgagagtgtcaccaaaattataaac
aaagtctctcctctacttgttgacgctgaagttgacgttagattgtgcatttgtgatctt
cttgaatctcttgcaaaaatcgacttttctctggatgatgtggcaaagcgcatccgagat
atgaattccatctcagccatggaagttgatgaccttgactatgaaaggatagctaatgct
tatgtggagattgactcggatttctttgctaaatcctcgaagcagcacacgatgattata
ctgtcacaaagtttatacaacttatcatcggaatccattatgataaggggaagcgcacat
aagctcttgtcatctttcattgaattttcggcctcaatactatgccaagaagcttcagct
cactctggcgttggcaaagaggtcaaaatagctgatgcaagctggacaggaaagcataca
ctgtccattgttgattttatcttgaaacacattgctgatgcaataagcagaggaggcaat
atagtgaaggagtggattcttttgatacgtgaaatggtgacaaaactcccagatgctgga
aatcttggtgcatttagacctttatgctctgaagatgagaatcttgatttttttaaatct
attattcacattcagtcacaccgtagatcaaaggcgatttcacgcttcgcaaaactggtc
ggagatagcagcctgcctgagggagtcttgagaaaactgtttgtcgcagtctttttccac
atgttgctcgatggacaagatgtaaaagaaaaagagaacaatgtccgtaatgcatgcaca
gaggcccttgcatctgtatctgcacatatgagttggaagtcgtactatgctctattgaat
cggtgtttccgtgagatgcacaatcataccaaaaagggaaagcttctgctgcggcttatc
tgcttgattttggataaatttcattttacagaagatggtggttacaggcaagaggagatt
gaggggattcataaaagccttcaaactgtgtttggaaagatgcagaagctgatggattct
gagtctgataatgttaatgttaacagcagtgtagctgcgctgaaggttctaaagctgctc
cccaaagacgtaatggacgattatctgtcccctataattaagaggattgccacttttacg
aagaaccggttggagagcacacgtgatgaagccagatctgctctggttgcttgtttgaag
gaattggggctcgagtacttgcaggttgtcatcaaaagtttacgtgatatcctgaaacga
ggatctgagttgcatgtgctgggatacaccgtccattctatcttatcgaagtgcttgtcc
aaacctacgtgtgggaagttggatcattgtttggatgatctccttgctgtggtggaaaac
gacatctttggcgaggttgctgaacagaaagatgtggacaaattcaaatccaaaatgaaa
gagacaagaaaacgcatgtcattcgagagtctgaagttgatttgtgaaaatgtgacgttc
agagagcatgcattgaaactactttccccggtcacttctcagctgcgacggcatttaact
ccaaagataaaatcaaatctggagaagatgttacaacaaattgcagttggtattgaaggc
aatccatctgttgaccaagtagatctgtttgtttttatatatggccgcgttgacgacggt
attaacaacaggaatggtcctggagatcaagggtcttctccgccatcccaaaagaaaggg
aaatcaagagatcgacaagagactgctgggttgatttctggtactaggtcttgtccacat
cttataacagtgtttgctctggacttactgcaaaacagactgaagaaaatcaaactcgac
aacactgataaacagctgctggggaagttggattcatttgtcaaactacttacggaatgc
ttgcgttctaagtatgaagagattgtgtcatcagcccttagatgtttcacttcattaata
tggtttccactgccttccctcatttctgaagcagatgagttgaaaacagcattgttaaca
attgctcagtctgcagtgaattccagcagtcctcttgtgcagtcatgccttaagctatta
acaacgcttctcggtaataaaaacattactttgtctccggagcagctaaagttggtgatt
cagttccccatgtttgttgatctggagtccgatccatcctttgttaacctttcactactc
aaggccattgtgaaacgaaaccttgtggttccagagatttatgacgttgcagttcaggtt
tcagagttgttggtaaaaagtcagcaggaatcaatccgcaagaaatgcaaacagatactg
ttacagtttttggtccactacacactttctgagaaacgtttacagcaacatgtggaattt
ctgctgcaaaatctgaagtatgaacatccaagtggaagagaagcagtccttgacatgctt
catactctaatcttgaaattctcagtaccaaatctcggcaagaagtcatttcttgaccaa
cagtcgaaaacaatgttcattcagcttgctatgtgtttgggcaatgatattgatcaaaaa
gtcctgccccggatcggttctgtgatagaacttctgatagggtgcatcagtgaagatcaa
gttggtaccattctatcgtattgtctgtgttggtataagcagcaaaggttacaggctgtg
gcagcacaggtgttgggatttattattgactccatggagaaatcatttcggaagcatatc
cacaatacattggaggatgccaaagtgataatgaagtctgctgtcagtgcttccagcctg
cataatgccgaggaaggtgttattccgttctggaaggaagcatactactcactcgttatg
atagagaagatggtccggcaatttcctgatttaaaactcaaagaagatttagaggatata
tggaaaatggtatttaagttcttgttgtacccacacgcatggttgcgaagtatatcacgc
cggctactgaattattatttcaaggcattggctaggaggaaaagagcagaatctcagaca
gtagtatctgattctcttcttgagaacccaagtagcctgttctcggttgctgtttctctt
tgctcccagttaaaggagctacccaccactggagatgttaacgtcgatctcctcgtagaa
aatattgttttcgcggtctcgagtcttcattccctgattggacattctgttcaagcaaaa
gacaatgggttctggtccggtcttggcgaggatgagcaagtggtgttcctaaaagccttt
gaagtgcttgattcagggaaaggaaggtctacttttctgtctcttacctcaggcaaacgt
actgagaacggcgaggaggatgatgctgcgagtggtgtaaggaatgtattgattggaagc
ttgctcaagaggctcgggaaggttgctcttgatacggagtctgttcagatgaagattgtg
ttcaacgtctacaaagcattcacctcacagatgaatcaagatgactgtcgtttatatgcc
ttcaaaattctgcttccattgtacaaagtctgtgaaggtttcacaggaaagatcatctca
gatgagtctaaacaactagcagaggaggtacgtgacagtataagagacaagacattaggc
aaccaactctttgtggaggtgtacagtgagataaggaaaagcttgagaaacaagagggag
aagagaaagagagaagaaaagacaatggcagtggtgaatccagagagaaatgcaaagagg
aaactgaggttagcttcaaagaacaaagccaacaagaggaggaggatgactagcatgaag
ttatctagatgggctcgctcttga
DBGET
integrated database retrieval system
