Brassica napus (rape): 106452868
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Entry
106452868 CDS
T04128
Name
(RefSeq) exopolygalacturonase clone GBGA483
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106452868
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106452868
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
106452868
NCBI-ProteinID:
XP_022575634
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Position
A5:26402851..26409596
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AA seq
454 aa
AA seq
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MVGLRRAKTVLLVLVVVISNTIADGAPLDRGPKGSGAAAPLGATVPGGGNAAAPVGATAP
AAAAGGLAAAPAGAAGSLDVKAAGAKGDGTTDDTAAFTAVWKTACEAPGPSTITVPKGDY
LVNNIEFLGPCKGPVTFEMSGNMKAPATVAAVKPNSGWVDFTNLADFTLNGNGAIFDGQG
SLAWKANDCAKTGKCNSLPINIRFTGLTNSKIIGITSTNSKLFHMNVLNCKNVTLENIGI
DAPPESLNTDGIHIGRSVGVNLIGAKVKTGDDCVSIGDGTENLIVENVECGPGHGIAVGS
LGRYPNEQPVRGVTVRKCLIKNTSNGVRIKTWPGSPPGIASNIIFEDITMDNVSTPILID
QEYCPYADCKAGVPSKVKLSDVTFKNIKGTSATKTAVKLICSVGTPCTNVALANINLVHN
GPEGPAVGACANMKPVLTGQMIPPACTEIAKPGP
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtttgcgcagagcaaagacggtacttcttgtattagtggtggttatttccaac
acaatagcagacggggcaccccttgatcgaggacccaaaggaagcggcgcagctgcacct
cttggcgctacggttcccggaggaggcaatgcagctgcaccggttggagctacagcacca
gcagcagccgcaggaggccttgcagctgcaccagcaggagccgcaggatcacttgacgtt
aaagcagcaggagccaaaggagacggaacaaccgatgacactgcggcatttacggctgta
tggaaaacagcatgtgaagcaccaggaccgagcacgattacagtgccaaagggtgactat
ttggtgaataacatagagttcttaggtccatgcaagggtcccgtcactttcgaaatgagt
ggcaatatgaaagctccggctacggtcgctgccgttaagcccaactctggatgggttgat
tttactaatcttgctgatttcactttgaacggaaacggagccattttcgacggtcaaggc
tcactcgcctggaaggccaatgactgcgccaaaactggaaagtgcaactctctccccatt
aacatacgattcacgggtctcacaaactcgaaaatcatcggcataacatcaacgaacagc
aaacttttccacatgaacgttctcaactgcaagaacgtaactcttgagaatattggtatt
gatgcacctccggagagtctcaacaccgatggcatccacatcggaaggtccgttggagtg
aacttaataggggcaaaggttaaaacaggagatgactgcgtttccattggagatggtact
gaaaatctcattgttgagaatgtggaatgtggaccaggacacggcattgctgtaggaagt
cttggaaggtaccctaatgagcaaccagtcagaggagtcaccgtgaggaaatgcctcatc
aagaacaccagtaatggtgtccgcatcaagacatggcctggatctccccctggtatcgcc
tccaacattatttttgaggatatcacaatggacaatgttagcactcccattctcatcgac
caagagtattgtccttatgccgactgcaaagctggggtaccatctaaagtgaaattatcg
gatgtgaccttcaagaacattaagggcacatcagcgacaaagactgctgtgaaattaatc
tgcagcgtaggcacgccttgcactaatgttgctcttgctaacatcaacttggtccacaac
ggtccagaaggaccagctgtgggggcatgtgctaacatgaagcctgttctcaccggacag
atgattccacctgcttgcactgagatcgctaaaccgggtccttga
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