Brassica napus (rape): 106452978
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Entry
106452978 CDS
T04128
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106452978
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106452978
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106452978
NCBI-ProteinID:
XP_013750643
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Position
A5:26741942..26746549
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AA seq
416 aa
AA seq
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MAVTKLILFASALLVTTLFIGVNSSRSNETWHEHAVEKPEEVAAMVDMSIRNSTERRRLG
YFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRYYVVTDPNDDDPVNP
VPGTLRHAVIQNEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVT
NIIVHGIHIHDCKPTGNAMVRSSPSHYGWRSMADGDAISIFGSSHIWIDHNSLSNCADGL
VDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH
GYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGQSKWKHWNW
RSEGDLFLNGAFFTRSGAGAGAGYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcacaaaacttatcctctttgcttctgcattacttgtaacaacgctgtttatc
ggcgttaattcatccaggtcgaatgaaacatggcatgaacatgcagttgagaaaccagag
gaagtagctgccatggtggacatgagcattcgcaacagcacggagcggagacgcttaggc
tacttctcctgcgccaccggcaacccaatcgacgactgctggcgctgcgaccgcaaatgg
cagctccgccgcaaacgcctcgccgactgctcgatcggattcggccgcaacgcgatcggc
ggccgcgacggccgctactacgtcgtgaccgaccccaacgacgacgatcccgtcaacccc
gtcccgggaacgctccgccacgccgtgatccagaacgagccgctctggatcgtcttcaag
cgcgacatggtcataaccctaaagcaggagctgatcatgaacagcttcaagaccatcgac
ggccgcggcgtcaacgtccacatcgccaacggcgcgtgcctcacgatccagtacgtgact
aacattattgttcatgggattcatattcatgattgtaagcccacgggtaacgcgatggtg
agaagctcaccgtcgcattacgggtggagatcgatggctgatggtgacgcgatctcgatc
tttgggtcgagtcatatctggattgatcataactcgctctcgaattgcgctgatgggctt
gtggatgccgttatgagctccactgcgattacagtctctaacaacttcttcactcaccac
aatgaggttatgttgttggggcatagtgattcatacacaagggacaaagtgatgcaagtt
acaattgcttacaaccattttggtgagggtcttatccagagaatgccaaggtgtaggcat
ggatacttccatgtagtgaacaacgactacacacactgggaaatgtatgctattggtggt
agtgctggtccgactatcaacagtcaggggaatcgatttcttgccccagtaaacccattt
gctaaggaggtgactaagagggagtacacgggacaatcaaaatggaagcactggaattgg
agatcagaaggagatcttttcttaaacggagcatttttcacacggtctggggctggagct
ggagccggctacgccagagcttcgagtttgtcggccaaatcatcctcactcgtaggcacc
atgacctcttactctggtgctcttaactgcagagccggtcgcaggtgttaa
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