Brassica napus (rape): 111197831
Help
Entry
111197831 CDS
T04128
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111197831
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111197831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111197831
NCBI-ProteinID:
XP_022559241
LinkDB
All DBs
Position
C5:52716637..52719136
Genome browser
AA seq
364 aa
AA seq
DB search
MGNLHGLHRSHHHNAPFPPSPAPPSSTSPYVPHMTVEPYCHVDSSLRSLAGKAEGFGRAA
VGGLNGPVCHVTSLADEGPGSLREACKRPEPLWIVFDVSGTIHLSSFVNVSSHKTVDGRG
QRVKITGKGLRLKQSENVIICNLEFEGGVGPDADAIQIKPKSSTIWIDRCTLKNYYDGLI
DITRESTDITVSRCHFVNHNKTMLIGADPSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAK
IHLFNNYTRHWSIYAVGAGVEAQVYSQCNIYEAGEKKTVFKYITEKAADKEEAEAGFIRS
EGDWFLNGAKSCLSHDKEHHVFSPTQHYSGWTVESSTEKLKKYIKHSTGWQNLPLPPDQL
PTTA
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacttacacggccttcacagatcccatcaccacaacgcccctttcccaccctct
ccagctcctccatcttcaacgtctccatacgttccccacatgacggtggaaccttattgc
cacgtagactcaagcctccgctccctcgccggaaaggccgaaggtttcggacgcgccgcc
gttggtggtcttaatggtccggtttgccacgtcacttctttagctgacgaaggtccagga
tcgttacgagaggcttgtaagaggccagaaccgttatggattgtgttcgatgtgtctgga
acgatccacttatcttcgtttgtgaacgtatcatcccacaaaacggtggacggaagaggg
caacgagtgaagataacagggaaagggttaaggctaaaacaaagtgaaaacgttataata
tgtaaccttgaattcgaaggcggtgtaggaccagacgcagacgctattcagatcaaacca
aaatcaagcaccatttggattgatcgttgtactctcaagaattactacgatggtttgatt
gatatcacacgagaaagcactgacattactgtctcaagatgccatttcgtgaaccacaac
aagacgatgttgatcggcgcggacccaagtcacgtgacggaccgatgcataagagttacg
attcatcactgcttcttcgatggtacacgtcagcgacaccctcgtgttcgcttcgcaaaa
atacatctcttcaacaactacactcgtcactggtccatctacgctgtcggagccggcgtc
gaagctcaggtatattcccagtgcaacatatatgaagctggtgagaagaagactgtgttt
aagtacattactgagaaggctgccgataaagaggaagccgaagctggttttataagatca
gaaggggattggttcttgaacggcgccaagtcgtgtcttagccacgacaaagagcaccac
gtgttctctccgactcaacactattctggatggaccgttgagtcttcaacagagaaactc
aagaaatatattaaacactcgaccggctggcagaaccttccgcttccacccgaccaactt
ccaaccacagcataa
DBGET
integrated database retrieval system
