Brassica napus (rape): 111197833
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Entry
111197833 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111197833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
111197833
03041 Spliceosome [BR:
bna03041
]
111197833
03009 Ribosome biogenesis [BR:
bna03009
]
111197833
03016 Transfer RNA biogenesis [BR:
bna03016
]
111197833
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111197833
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111197833
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111197833
Complex C
U4/U6.U5 tri-SnRNP related factors
111197833
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
111197833
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111197833
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111197833
NCBI-ProteinID:
XP_022575571
LinkDB
All DBs
Position
A5:complement(25925036..25929928)
Genome browser
AA seq
988 aa
AA seq
DB search
MSTIMESPETLGKRKASSDETPTPEPTTKRRSSQKRACVHEVAVPNGYTPSKEEAIHGTL
DNPLYNGDMAKTYPFQLDPFQSISVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELQHEFHDVGLMTGDVTISPNASCLVMTTEILRAMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQP
CHVVYTDFRPTPLQHYAFPMGGSGLYLVVDENEQFREANFIKMHDTFPKPKSEGKKSANG
KSGGRGGAKGGGGGGGDSDVYKIVKMIMERKFQPVIIFSFSRRECENHALSMSKLDFNTE
EEKSTVEEVFNNAMLCLNEEDRSLSAIEMMLPLLQRGIAVHHSGLLPVLKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDERGI
CIIMIDEQMEMDVLKDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIKHSFHQF
QYEKALPDIENKVTKLEEEAAILDASGKAEVAEYHKLKLDIAPLEKKLMSEIIRPERVLC
FLDTGRLVKIREGGTDWGWGVVVNVVKKTSVGTSSQGGGYIVDTLLHCSTGVSENGAKPK
PCPPRPGEKGEMHVVPVQLPLITALSRLRISVPSDLRPLEARQSILLAVQELSSRFPLGF
PKLHPVKDMNIQDTEIVELVSQIEEAEQKLLAHPMHKSEDDQQMKSFQRKAEVNYEIQQF
KSKMRDSQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQVAALASCFIPVDKSNEKVELKNELNRPLQQLKDSARRIAEIQHECKLEIDV
EEYVESTIREGLMDVIYCWSTGSTFAEVMNKTDIFEGSIIRSARRLDEFLNQLRLAAEAV
GENNLASKFAAASESLRRGIMFANSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaataatggaatcaccggagacactcggcaagagaaaagcatcctccgacgag
acccctacgccagagcccacgacgaagcgtagaagcagccagaaacgagcttgcgtacac
gaagtcgccgtccccaacggctacacaccgtcgaaagaggaagcgattcacggaactcta
gataatcctctctacaacggagacatggccaaaacctaccctttccagctcgacccgttc
cagagcatctccgtagcgtgcctggagaggaaagaatcgattttggtctccgcccacact
tcagctggtaaaacagctgttgcggagtatgctatcgccatggcctttagagataagcag
agggtgatttacacttctcctttgaaagcattgagtaaccagaagtacagagagctccag
cacgagtttcacgacgttggtttgatgacaggtgacgtcacgatctcccctaatgctagt
tgcttggtgatgacgactgagattttgagagcgatgctttacagaggctctgaggttttg
aaggaggttgcttgggtgatttttgatgagattcattacatgaaggatagggagagaggg
gttgtttgggaggagagtattattttcttgccgcctgctattaagatggtttttctttcg
gccacgatgtctaatgctactgagtttgcggagtggatttgctatctgcataagcagccg
tgtcacgtggtgtatacggactttaggcccacgcctctgcagcattatgcttttcctatg
ggtgggagtgggctgtaccttgtagttgatgagaatgagcagtttagagaggctaatttc
attaagatgcatgatactttcccaaaaccaaaatctgaggggaaaaagagtgcaaatggc
aaatcaggtggtaggggcggcgctaaaggtggtggcggcggcggtggtgattctgatgtt
tacaaaattgtaaagatgatcatggaaagaaagtttcagccagtcatcatcttcagcttc
agtaggagggaatgtgagaatcatgcactgtcaatgtcaaaactcgattttaatacggag
gaagagaagtcgactgtggaagaggtattcaataatgctatgctgtgcctgaatgaggag
gatagatctttgtctgccattgagatgatgttgccactgctccaacgtggtattgctgtt
caccattctgggcttcttcctgtcctcaaggagttagtggaacttctctttcaggaagga
cttgtaaaagcgctttttgccacagaaacttttgctatgggtttgaacatgcctgcaaaa
actgtagtgtttactgctgttaagaagtgggatggtgacagccatcgtttcattgggtct
ggtgaatatatccagatgagcggcagggctggacgtcgtggaaaggatgaacgtggtatc
tgcattattatgattgatgaacagatggaaatggatgtcctcaaggacatgatgctgggc
aaaccagcccctttgcttagtacttttaggttgagttactacacaattttgaatctattg
agtcgtgccgaaggacaatttacagctgagcatgtgataaagcactcgttccaccagttc
cagtatgaaaaggctttacctgatattgagaacaaggtgaccaaacttgaagaggaagct
gccatccttgatgcttctggaaaggcggaggttgctgagtaccataagctaaaacttgac
atagctccactggaaaagaaacttatgtcagagataataaggcctgaaagggtgctttgt
tttcttgatactggtcggctggttaagatacgagaaggtggaacagactggggatgggga
gttgtagttaatgttgtaaagaaaacttcagttggaacctcttcacagggtggcggatat
atagtggatactctacttcattgctccactggtgttagcgagaatggtgcaaagccaaaa
ccgtgtcctccccgtcctggggaaaagggtgagatgcatgtggttcctgttcagctacca
ttaattactgctttgagcagactaaggatatcggttccgtctgatcttcggccactagaa
gcaagacagagcatactacttgcagtacaggagttgtcgagtcgcttcccgttagggttc
ccaaaactccatccagtcaaggacatgaatattcaagatacagagatagtggagctggtc
agccaaattgaagaagctgagcagaagttacttgctcatccgatgcacaagtctgaagat
gatcagcaaatgaagagtttccagaggaaagcggaggtgaattatgaaattcagcagttc
aaatcgaaaatgcgtgattcccagcttcaaaagtttagagatgagcttaggaaccgttct
cgggtattaaagaaacttggacacattgatgctgatggtgtcgtccagttaaagggacga
gctgcctgcttgatagacacaggggatgaactgcttgtcactgaactgatgttcaatggt
actttcaatgatctggatcaccaccaagtagctgccctcgcaagctgtttcattcctgta
gataaatcaaatgaaaaggtagaactaaaaaatgaactcaatagaccgttgcagcagctc
aaagatagcgcacggagaattgcagagatacaacatgaatgcaaactggaaattgacgtt
gaagagtatgtagaatccaccatcagggaaggcctgatggacgttatctactgttggtca
acgggttcgacctttgcagaggttatgaataagactgacatattcgagggaagtatcatt
aggagcgctagaaggctcgacgagtttctgaaccagcttcgacttgcagcggaagcagtt
ggagagaacaatttggcgagcaagtttgcagctgctagcgagagcttgcgaagaggtatt
atgtttgcgaattcactttatttataa
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