KEGG   Brassica napus (rape): 111197962
Entry
111197962         CDS       T04128                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111197962
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    111197962
   03036 Chromosome and associated proteins [BR:bna03036]
    111197962
Spliceosome [BR:bna03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111197962
 Complex B
    111197962
 Complex C
   U2 SnRNP specific factors
    111197962
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111197962
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N TIP120
Other DBs
NCBI-GeneID: 111197962
NCBI-ProteinID: XP_013661265
UniProt: A0A816NP02
LinkDB
Position
A9:4952924..4957115
AA seq 1267 aa
MADLDPEIAKTQEERRKIEAELASLTSVNFDRDLYGGNDRDSYVTSIAPNDEEDSNLDAT
GSLVAQRLASYTAPKSILNDVARAHVEDDDGGFKPRQTIAEREGDYRNRRLNRVLSPDRV
DPFAMGEKTPDPSVRTYNDHMRETAVQREREETMRLIAKKKKEAEEAAKEQKDSGAPAAS
SKRRNRWDHAEEDGGGGKKAKASDSDWDVADSAPGIGKWDATPGRAGDATPSAGRRGRNR
WDETPTPGRVTDSDATPGGGVTPGATPSGVTWDATPKGSATPTPKRQRSRWDETPATMGS
ATPMGGMTPTAAYTPGVTPFGGIDMATPTPSQLNLRGAMTPEQYNLARWEKDIEERNRPL
SDEELDAMFPTEGYKVLDPPASYVPVRTPARKAMGTPTPMTTPGYVIPEEHRGQQFDVPQ
ELPDGLPFMKPEDYQYFAALLNEENEEELSPDEQKERKIMKLLLKVKNGTPAQRKTALRQ
LTDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPFVHKILVVI
EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA
LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDEN
QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMD
AIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRSDILPEFFKHF
WVRRMALEKRNYKQLVETTVEIANKVGVADIVARVVEDLKDESEPYRRMVMETIDKVITN
LGASDIDSRLEELLIDGILYAFQEQTTDDTNVMLNGFGAVVNGLGQRVKPYLPQICGTIK
WRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR
ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGM
RVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSR
PELTMFV
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggcggatctagatccagagatcgctaaaactcaggaagagaggcgtaagatcgaagca
gagctcgcttccctcacttccgtgaacttcgatcgcgatctctacggaggcaacgaccgt
gattcctatgtaacctccatcgcgccgaacgacgaggaggattcgaatctggacgccacc
ggctccctcgtagctcagcgtctcgcctcctacaccgctcccaagtcgatcctcaacgac
gtggctcgcgctcacgtggaagatgacgacggagggttcaagcctaggcagactatcgcg
gagcgtgagggtgattatcgtaacaggaggcttaaccgagttctatctccggatagagtt
gatccgtttgctatgggggagaagactccggatccgagtgttaggacttataatgatcat
atgagggagacggctgtgcagagggagagggaggagactatgaggcttattgctaagaag
aagaaagaagcggaagaagctgctaaggagcagaaagattctggtgctcctgctgcttct
tccaagaggaggaacagatgggaccatgctgaagaagacggtggtggtggaaagaaagct
aaagcttcggattcggattgggatgtggctgattcagctccagggattgggaaatgggac
gcgactccagggagagctggtgatgccacaccatctgctggaaggagggggaggaacaga
tgggatgagactcctacgcctgggcgtgtgactgattctgatgctacaccaggtgggggt
gttactcccggtgcaactccttcaggtgttacttgggacgcgactccgaaagggtccgca
acgccgacaccgaagcgtcaacgttctaggtgggatgagacaccagccactatggggagt
gctacacctatgggtggaatgactcctactgctgcatacactcctggtgtcactccgttt
ggggggattgatatggctactccaactccgagtcagcttaatctgcgtggtgctatgact
ccggagcagtacaatttggcgaggtgggagaaggatattgaagagagaaacagaccgttg
agtgatgaagagcttgatgccatgtttcctacagaaggatacaaggtgttggacccgcct
gcttcttatgttcccgtcagaacccctgctaggaaggctatgggaaccccaacacccatg
acaactcctggctacgttattcctgaggaacaccgtgggcagcagtttgatgtgcctcag
gagcttcctgatggtctgccgtttatgaaaccagaggactatcagtattttgcagcgctt
ttgaatgaagagaacgaagaagagctgtctcctgacgagcagaaagaacgcaagatcatg
aaactgttgctcaaggtcaaaaacggaacgcctgctcaaaggaaaacagctctaaggcag
cttactgataaggctcgtgagcttggtgctggtccgttgtttaataaaattctgccgttg
ctcatgcaacccactttggaagatcaggagaggcatcttttggtgaaagttattgacagg
attctgtacaaacttgatgagctggtgaggcctttcgtccacaagattctggttgttatt
gagcctttgctgattgatgaagattactatgctcgtgttgaagggagagaaattatttcg
aaccttagcaaagcagcaggcttagccacgatgattgcagctatgcgtcctgatatagac
aacattgatgagtatgtgaggaacacaacagcaagagctttcagtgtggtggcttcagct
ctgggaatccctgcgctcttgccgttcctgaaagccgtttgccagagtaagaagtcatgg
caggcacggcacactgggattaagattgtccagcagattgccatactaatcggctgtgct
gttttacctcatttgaggtctctggtggaaattatcgaacatggtctcagtgatgagaat
cagaaggttaggaccattacggccttgtcgctggctgctcttgccgaagctgctgctcct
tatggtatcgagagctttgactctgttctgaagcctctgtggaaaggtattaggtctcac
cgtggaaaagtcttggctgcgttcttgaaggcgattggttttatcatccccttgatggat
gctatatacgcgagctattacacaaaagaagtgatggttatcttgatccgcgagttccag
tcccctgatgaagagatgaagaagattgtcctcaaggtagtgaaacagtgtgtaagcaca
gaaggggttgaaccggattacatccgcagtgatattctgcctgagtttttcaagcatttc
tgggttaggagaatggctctagagaagagaaactataagcagcttgttgaaactaccgtt
gagattgcgaacaaggttggtgttgctgatatcgtggcgagggttgttgaagatcttaaa
gacgagagtgagccataccgccgtatggttatggaaaccattgacaaggttatcacaaac
ttaggagcatctgatattgattcgagattggaggagctactcatagatggcattctttat
gctttccaagagcagacaaccgatgatactaatgtgatgcttaatgggttcggtgctgtg
gtgaatggtcttggtcagcgagtgaagccttaccttcctcagatctgtggtaccatcaag
tggagattaaacaacaagagtgcaaaggtgagacaacaagccgctgatcttatttccaga
attgctgttgtgatgaagcagtgtggagaggaacagttgatgggacatctaggtgttgtt
ttgtacgagtatctcggagaagagtaccctgaagtcttgggatcaattctcggagctctc
aaagcaattgtcaacgtgattggtatgacaaagatgactcctcccattaaggatctgctt
ccaagactgactcccattttgaagaacaggcacgagaaagtgcaagagaactgtatcgac
cttgtcggtagaattgctgatcgtggtgctgagtttgttccagcgagggaatggatgaga
atctgtttcgagcttcttgagatgctcaaagctcataagaaaggtattcgacgtgccact
gtcaacactttcgggtacatagccaaagccattggaccacaagacgttctagccacgtta
ctgaacaatctcaaagtccaagagcgccagaaccgtgtctgcaccacagtcgcgatcgcc
atagtcgctgaaacctgctctccgtttactgtcttgcctgctctgatgaacgagtaccgt
gttccagagctcaacgtccaaaacggtgtcctcaaatccctctctttcctcttcgagtac
attggagaaatgggcaaggattacatatacgcggtcacgccgttgctcgaagacgcgctc
atggacagagacttggttcacagacaaaccgcagcttcagcggtgaaacacatggcgtta
ggtgtagctggtctgggatgcgaagacgctttggttcacttgctcaacttcatctggccc
aacatcttcgagacatctcctcacgtgatcaacgctgtgatggaagccattgaagggatg
agagtcgcgctaggtgcagctgttatactgaactattgtctgcagggtttgtttcatcca
gctcgcaaagtccgtgaagtgtactggaagatttacaactcgctctacattggtgctcag
gacacgcttgttgctgcttacccggtccttgaagatgagcagaacaatgtttatagtcga
ccagagttaacgatgtttgtgtga

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