Brassica napus (rape): 111199189
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Entry
111199189 CDS
T04128
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
bna
Brassica napus (rape)
Pathway
bna03030
DNA replication
bna03420
Nucleotide excision repair
bna03430
Mismatch repair
bna03440
Homologous recombination
bna03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111199189
03420 Nucleotide excision repair
111199189
03430 Mismatch repair
111199189
03440 Homologous recombination
111199189
03460 Fanconi anemia pathway
111199189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
111199189
03032 DNA replication proteins [BR:
bna03032
]
111199189
03400 DNA repair and recombination proteins [BR:
bna03400
]
111199189
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111199189
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111199189
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111199189
MMR (mismatch excision repair)
111199189
DSBR (double strand breaks repair)
HR (homologous recombination)
111199189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
111199189
NCBI-ProteinID:
XP_022544324
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All DBs
Position
A7:complement(6482957..6485522)
Genome browser
AA seq
627 aa
AA seq
DB search
MPVTLTPNAIAAINTGDVNLKPLLQVLDIRLIGKTQERYRLLISDGVSAQHAMLAVQLND
RVKSGQVEKGSIVQLIDYICSDVKGRRLTIVLNMETIVPQSETIGNPTMSAESDTEFQKP
VPGPGNIHPPSRVGSVEQHSTNKAPPRGVNITPSVQPAYQPPPSYRNHGPIMKNEAPARI
IPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDSDGGEIRITCFNAVVD
RFYDVIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESASTVELCPDEDGSIPRQQFSF
RPIGDVEKAENNAILDIIGVVTSVNPSVPILRKNGMETYRRTLNLKDDSGKAVEVTLWGE
FCNRDGRELEDMVGSAFYPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAQKLRNWF
DHGGKDTASSSISRDNMPGGGSRNEIRKVVSQIKEEGLGRSDKPDWVTVKATIAFIKTDS
FCYTACPLMIGDKQCNKKVTRTGTNMWLCDRCNQEFEECDYRYLLQVQIQDHTGMAWVTA
FQESGEEIMGCPAKQLYTLKHVLQNDEEFAVIVRNRLFHQYMLKLKIKEETYAEEHRLKM
TVVKVDTVNYTSESRYLLNLLVGSLQV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgactttgactccgaacgccatcgcggcgattaacacaggcgacgtcaatctg
aagccgctgttacaggttttagatatcagattgatagggaaaactcaggagaggtaccgt
ttgctaatctcagatggtgtctcagctcagcacgctatgctcgctgttcagctcaacgat
cgggttaagtcaggacaggttgagaagggatccattgtccagctcatcgattacatttgt
agcgacgttaaaggccgcaggcttacgattgtgctgaacatggagaccatagtaccacag
tctgaaaccattgggaacccaacaatgtctgcagaatctgatacagaattccaaaagcca
gttccaggtccaggcaacatacatcctccgagtagggttggttcagttgagcagcattca
actaataaagcgcctcccaggggtgtaaacattactccatctgttcagcctgcatatcaa
ccacctccaagctacagaaatcatggacccataatgaagaacgaggctccagctcgaatc
atccctatcgctgctctcaatccatatcaaggtcggtgggccattaaggctagggtaact
gcaaaaggagatatcaggcgttataacaacgcaaaaggagacgggaaagtattctctttt
gatctgcttgactctgatggaggggagattcgtatcacttgcttcaatgctgttgttgac
cgattctatgatgttattgaggttggtaaggtgtatttgatttcaaagggaagtttgaag
cctgcacagaaaaacttcaaccacttaaagaacgaatgggaaattttcttggagtcagca
tcgactgtggagctttgtcccgatgaagatggctccataccaaggcagcagttctccttc
cgtcctataggcgacgttgagaaggctgaaaacaatgccatactcgatatcattggggtt
gtgacttctgtgaacccttctgtcccaatcctaaggaagaacgggatggaaacctatcgg
agaaccctcaatctgaaggatgattcaggaaaggccgttgaggttacgctatggggagag
ttctgtaaccgagatggtcgggaacttgaagacatggttggttcagccttttaccccgtt
ttagcaataaaagctggaaaagtaagcgacttcagtggtaaatcagttgggacaatatcg
tcaacacagctcttcataaatccagattttcctgaagctcagaaactgaggaactggttc
gatcacggtggaaaagatactgcatcctcctccatttccagagacaatatgcctggagga
ggttcgaggaacgagatacgaaaagttgtttcccagatcaaagaggaaggtcttggaaga
tcagacaagcctgactgggtcacagtcaaagcaaccatagcattcatcaaaactgatagc
ttctgctacacagcttgtcctttgatgattggagataagcaatgcaacaagaaggtgaca
cggactggaacaaacatgtggctctgtgaccggtgcaaccaagagtttgaggaatgcgac
tacagataccttcttcaagtgcagattcaagaccacactgggatggcttgggtaacggcg
ttccaagaatccggtgaagaaatcatgggatgtccggctaagcagctttacacgttgaag
cacgtattgcagaatgatgaggaattcgcagtgattgttagaaacagactgtttcatcag
tacatgttaaagttgaagattaaagaggaaacgtatgcggaggaacacagactgaagatg
actgtggtgaaggttgatacggtgaattacacatccgagagtagatacttgctcaacttg
ctcgttgggtctctacaggtataa
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