Brassica napus (rape): 111200419
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Entry
111200419 CDS
T04128
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111200419
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111200419
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
XFP
Motif
Other DBs
NCBI-GeneID:
111200419
NCBI-ProteinID:
XP_022547258
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Position
A8:22806565..22809424
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AA seq
431 aa
AA seq
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MTVLPTWILAMMCLFFFVGAMENKTHDKISSLSRSDEIEWNRHAVTNPDEVADEVLALVE
MSARNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQFVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFEASHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTKDRAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLAAKSSSLVATITSEAGA
LPCRRGRQCSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacggttcttccgacatggattttagctatgatgtgtctattcttcttcgtcggagca
atggagaacaaaacacacgacaagatctcatctctctctagatcggacgaaatcgaatgg
aacagacacgcagtgacgaatccagatgaagtagcggacgaagttctcgccttggttgaa
atgagtgcaagaaaccataccgagaggaggaagctaggttactttacttgcggaacaggc
aaccccatcgacgattgctggcggtgcgatcgcaactggcacaagaaccgcaaacgccta
gcggactgcggcatcggttttggaagaaacgctatcggtggtcgcgacgggcgtttctac
gtagtcactgacccaagtgaccacgacgctgtcaaccctagaccggggacattacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgtgacatggtcattcagcta
aaacaagagctcattgtcaacagcttcaaaaccatcgacggacgcggagcaaacgttcac
atcgctaacggcggttgcataacgattcagtttgtgacgaacgttatagtccatggattg
catattcatgactgtagaccgaccggtaacgctatggtgcgaagctcggagacgcatttt
gggtggaggacgatggcggatggtgacgcgatttcgatctttgaggcgagtcatgtttgg
attgatcacaactcgctgtctcattgtgctgatgggctagtggatgcagtcatgggctcg
acggccattaccatctctaacaaccacatgactcatcacaatgaggttatgctgctcgga
catagtgattcttatacgaaggatagagctatgcaagttaccattgcttataaccatttt
ggtgtcggacttattcaaagaatgccaaggtgtcgacatggttatttccatgtcgtgaac
aatgactacactcactgggagatgtacgcgattggtggaagcgcaaacccgacaatcaac
agtcaaggaaaccgctacgccgctcctaaaaatccttttgctaaagaggtgacgaagaga
gtggacacaccagctagtcattggaaaggatggaactggagatcggaaggagatttgctt
cagaacggagcttacttcacttcttcaggagccgctgcatctggtagctacgcacgtgcc
tctagcctcgccgctaaatcttcttcattagttgcaaccattacttctgaggccggagct
cttccttgtcgtagaggacgtcaatgttcctcttag
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