KEGG   Brassica napus (rape): 111204276
Entry
111204276         CDS       T04128                                 
Name
(RefSeq) flowering time control protein FY isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111204276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    111204276
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111204276
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SPT8 WD40_like Beta-prop_DCAF12 WD_LRWD1 WDR54 PROPPIN Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 111204276
NCBI-ProteinID: XP_022554340
LinkDB
Position
C3:complement(3115450..3120148)
AA seq 662 aa
MYGGDSMQQQQQLPPMQNQHHVAAGGPPMHPPPMMRHPSASSTNLNPDYHHPSAPNPFDS
HVDSFGAKRMRKHTQRKAVDYTSTVVRYIQARTWQRDSRDVTSLQPTPAAAVDMLPPVAY
SDNPSTSFAAKFVHSSLNKNRCSINCVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQ
AHDQPIRSMVWSHNDIWMVSGDDGGTLKYWQSNMNNVKANRTAHKESIRDLSFCKTDLKF
CSCSDDTTVKVWDFTKCQEEITLTGHGWDVKCVDWHPTKSLLVSGGKDQLVKIWDARTAR
ELCSLHGHKNMVLSVKWNQNGNLLLTASKDQIIKLYDIRTMKELESFRGHTKDVTSLAWH
PSHEEYFVSGSLDGSICHWIVGHENPQIEISNAHDNSVWDLAWHPIGYLLSSGSNDHTTK
FWCRNRPGDNPRDALTMQNQGYNDQGFGNRMLDNFQPSEASPTPGAFVPGLTRKEGTIPG
IGIAMPFDASSQGEHKQPLPGGMAPPLPPGPHPSLIGSGQQQGYQQQHHHHQGHPQQIPP
MPNMPHLQRPPSSHMPLHAHHPRPMQMPPHGHMPPSSMPMPHQIPGPMGMQGGMNPQMSQ
GHYMGPASGAFQGPPTSGGPMYPQGRGFNRPQMMPGYNNPFQQQPQPPLPGGPPPNTNQQ
HQ
NT seq 1989 nt   +upstreamnt  +downstreamnt
atgtacggaggagattcgatgcagcagcagcagcagctcccaccgatgcagaatcaacac
catgtagccgccggaggtccaccgatgcatccaccaccgatgatgcgtcatccctcagcc
tcttccactaatctcaatcccgactaccaccatccctctgccccaaatcccttcgactcg
catgtagacagttttggggcgaaacgaatgaggaagcacacacagagaaaggctgttgat
tacacgagtaccgttgtgagatacattcaggctcgaacttggcagcgagactcaagggat
gtgacctctttgcaaccaaccccagctgctgcagttgatatgcttcctccagttgcctat
tcagataatccttctacaagctttgctgcaaagtttgttcactcgtctctaaacaagaac
cgttgctcaatcaactgtgtattgtggacaccttcaggaagacgtcttatcactggctcc
caaagtggggagtttactctttggaatgggcagtctttcaatttcgagatgattcttcag
gcgcatgatcaacctataaggtcgatggtatggagccacaatgacatttggatggtttct
ggtgatgatggaggcacactaaagtattggcagagcaacatgaataatgtgaaagccaat
agaactgctcacaaggaatctattcgtgatctaagtttctgtaaaacagatttgaagttc
tgttcgtgttctgatgatacaactgttaaagtttgggattttaccaagtgccaagaagaa
attacattaaccggccatggttgggatgtcaagtgcgtcgactggcaccccacaaaatcc
ctactagtttctggtggaaaagatcaacttgtcaaaatctgggatgccagaactgcgaga
gagctttgctcacttcatggtcacaaaaacatggtgcttagtgtgaagtggaaccaaaat
ggcaatttgcttttaacagcctcgaaagatcaaataattaagctgtatgatataaggact
atgaaagagcttgaatccttccgtgggcacacgaaagatgtaacatctttggcgtggcat
ccatcccacgaagagtactttgtcagtgggagccttgacggatcaatttgtcattggatt
gtggggcatgaaaacccgcagattgaaatctcaaatgctcatgataacagtgtttgggat
cttgcatggcatcctattggatatcttctttccagtggtagcaacgatcacacaaccaag
ttttggtgcagaaacaggcctggagataatcctcgagatgcccttactatgcagaaccaa
ggctataatgatcaaggttttggcaatcgcatgcttgataatttccaaccatccgaggca
tcgccaactcctggagcatttgttcctgggctgacacggaaggaggggaccatcccggga
atcggaatagcaatgccatttgatgcatcctcacaaggggaacataaacagcctcttcca
ggtggcatggctcctccgctgccacctggtccccacccatcgcttatagggagtggccag
cagcaagggtatcagcaacaacaccaccaccaccaaggtcatccccagcaaatccctcca
atgcccaatatgcctcatcttcagcgaccaccgtcgtctcatatgccattgcatgctcat
catccccggcctatgcaaatgcctcctcacggtcacatgccaccttcatcaatgcctatg
cctcatcagatacccggaccaatgggaatgcaagggggtatgaatcctcagatgtcgcaa
ggccattatatgggtcctgcttctggagcatttcaaggaccaccaaccagtggtggacca
atgtatcctcaaggacgtggtttcaaccgtccacagatgatgccagggtacaacaaccct
ttccaacagcagccgcaaccgcctttgcctggaggccctccaccaaacaccaatcaacaa
catcagtag

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