Brassica napus (rape): 111204298
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Entry
111204298 CDS
T04128
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
111204298
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
111204298
REST complex
111204298
Heterochromatin formation proteins
Other heterochromatin formation proteins
111204298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
111204298
NCBI-ProteinID:
XP_022554382
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All DBs
Position
C3:complement(3471165..3478119)
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AA seq
1353 aa
AA seq
DB search
MKRIRDDVYSSGSQFKRPLPSSRGESYVQSPVPGDGGVNSQKLTTDDALSYLKDVKEMFQ
DQRDKYDMFLEVMKDFKAQRTDTSGVIARVKELFKGHNNLIFGFNTFLPKGFEITLDEVE
EEAPPKKTVEFEEAISFVNKIKKRFQNDEDVYKSFLEILNMYRKDDKDITEVYNEVSALF
EDHLDLLEEFTRFLPESLAAHSAAQLIRSQAQRYRDRGSGPPLVRPMLIEKDRRRERAVA
SRGDRDHSVDRSDLNDDKAMVKMHREPKKRVDKENRERERERERERERRSRDLDDAEAEQ
DNLHHFSEKRKSSRRTEGFEAYSGPASHSEKNNLKSMYNQAFVFCEKVKERLCSQDDYQT
FLKCLNIFSNGIIHRKELQNLVSDLLGKFPDLMDEFNQFFERCESNDGFQHLAGVMSKKS
LSSEERLSRPVKGEEKETEREHKRDLDAAKEKERPNDKYMGKSIQELDLSDCERCTPSYR
LLPSDYPIPSVRHRQKLGAAVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEL
DMLLESVGSAAKSAEELLNNIIEKKISIEGSFRVEDHFTALNLRCIERLYGDHGLDVTDL
IRKNPTAALPVILTRLKQKQEEWTKCREDFNAVWADVYAKNHYKSLDHRSFYFKQQDSKN
LSAKALVTEIKDLKEKSQEEDDVLLSVAAGHRQPIIPHFEYEYLDRTIHEDLFKLVQFSC
EEICSTKEQIGKVLRLWKSFLEMMLGVPPRAKGSNSVEDVVETKHHGALTSGEVNVSSDS
TNLVSRQLKFAANGDEYASSGVSKHGATGLLKRDSSAKENCKDGEPANKDVATCSAVKPQ
KDQENGNGADKRFGDVDDRVATFPSGVENNIGKVGSGDSSGSRGILSKQGDAIENADTIV
IANGVLPDASKANSNYDEPGGPSNVEKEEGELSPIGDSEDNFVVYEDRDLKTTAKPEHSV
EAEGENDDADDEDGDDASEGGEDASGTESIGDECSQDGNGMEEEGEHDEIDGKAESEGEA
EGMDSHLIEEDNRLLPLSERVLLSVKPLSKHVAAAALLDERQKDSRVFYGNDDFYVLFRL
HRTLYERILSAKTYCTGSELNRRNTKDTSSPDPYARFMSALFSLLNGSAESSKFEDECRA
IIGNQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYEYEKSRKPGRVIDSVYYENAR
ILLHEENIYRLECSSSPSRLSIQLMDSIIEKPEAYAVSMDPTFASYLQKEFLSNSSGKKV
APQAIVLKRNMRGYSGLDDLAVACKAMEGVEVINGLECKMSCSSYKISYVLDTEDFFHRK
KKKQKKPSHEKSSSEQRKLYRVERFHKFLSASR
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggattagagatgacgtgtactcctccgggtctcaattcaaacgtcctttgccc
tcttctcgtggcgaatcatatgtgcagtctccagtacctggtgatgggggagtgaactct
cagaagctgactaccgatgatgctttgtcttacttgaaggacgttaaggagatgtttcag
gatcagagggacaagtatgatatgtttcttgaggttatgaaagacttcaaggcacaaagg
accgatacatctggtgtgattgcacgagtcaaggagttgtttaaagggcataacaatttg
attttcgggtttaacacgtttctgcctaaggggtttgaaataacgcttgatgaagtagaa
gaagaagctccacctaagaaaactgttgaatttgaagaagccatatcttttgttaataaa
attaagaaacggttccagaacgatgaagatgtctataagtctttcttggagatcttaaat
atgtatcggaaggatgataaggacatcactgaggtttacaatgaggtatcggctcttttt
gaggaccacctggatttgcttgaagagtttactaggttcttgccagagtctttggcggct
cattcagcagctcagttaatccggagtcaggcccaacggtatcgtgaccgaggatcaggt
cctcctcttgtgcgtccaatgttaatagagaaggatcgccgacgagaaagggctgttgct
tctcggggtgaccgtgatcatagtgttgaccgttctgaccttaatgatgataaagcaatg
gttaagatgcacagagagccgaagaaacgagtcgataaggagaacagagaaagagaaaga
gaaagagaaagagaaagagaaaggagaagccgtgatttggacgatgcagaagcagagcaa
gataacttgcaccatttctcagagaaaaggaagtcatccagaagaactgagggttttgaa
gcttattccggtcctgcttcacattctgagaaaaacaatctaaagagtatgtacaaccaa
gcatttgtgttttgtgagaaagtcaaggagagactatgcagccaagatgattatcagaca
ttcttgaagtgtctcaatattttcagcaatggaattatccacaggaaagagctgcagaat
ttggtttctgatctgcttggaaaattccctgatctcatggatgagtttaatcagttcttt
gagcgttgtgagagtaatgatggtttccagcacctcgctggcgttatgagcaaaaaatca
cttagcagtgaagaacgtttatctaggccagtgaagggggaggaaaaggaaacggaaaga
gaacacaaacgcgaccttgatgctgctaaggaaaaggagcgtcctaacgacaagtacatg
gggaaatctattcaagagcttgatctatctgattgcgagcgttgcactcctagctaccga
ctcctcccatcggattatccaataccttccgtccgccacagacaaaaattaggggctgct
gttttaaatgatcactgggtttctgtcacctcaggaagtgaagactactcttttaagcac
atgcgcagaaaccaatatgaagaaagtctgtttagatgtgaagatgacagatttgagttg
gatatgctgttggaatctgtgggttctgctgcgaaaagcgccgaagagttgttgaataat
ataattgagaagaaaataagtatagagggctccttccgggttgaagaccacttcacagcc
ctaaatttacggtgcatagagagactttatggcgaccatggtcttgacgtgactgaccta
atacgtaagaatccaaccgctgcacttcctgtaattcttactcgtttgaagcagaaacaa
gaagaatggacaaagtgccgtgaagattttaatgcggtctgggcggatgtgtatgcgaag
aatcattacaagtcacttgatcaccgcagcttctattttaagcagcaagattctaagaac
ttgagtgcaaaagcgctggtgactgaaatcaaggacctgaaagagaagtctcaggaagaa
gatgatgttcttctgtctgtagctgctggtcacagacaacccataattcctcacttcgag
tatgaatatttggacaggactattcatgaagatttattcaaactagtccaattttcgtgt
gaggagatatgttctacaaaggagcagatcggtaaagttctgaggctctggaaaagtttc
ctggaaatgatgcttggtgttccacccagggccaaggggtcaaattctgttgaagatgtt
gtagaaaccaagcatcacggtgcattgacgagtggggaggttaatgtgagctctgactcg
acaaatttggtttcgaggcaactaaagtttgctgccaatggagatgagtatgcttcatct
ggggtctccaaacatggcgcgactggtctgttaaagagggattcttcagcgaaagaaaat
tgtaaggatggtgagcctgctaataaagatgttgccacctgttctgctgtaaaacctcag
aaagaccaagaaaatggaaatggagccgataaacgatttggagatgttgatgacagagta
gccacattcccaagtggggtagaaaacaatattggtaaagtagggagtggcgattcctca
ggttcacgtggcattttatccaaacaaggtgacgctatagagaacgctgacaccatagtt
atagcaaatggagtgctaccagatgcttctaaagccaacagtaattatgatgaacctggt
ggtccatccaatgttgagaaggaggaaggtgaattgtcacctattggtgattctgaagac
aactttgttgtttatgaagatcgtgatttgaagactactgccaagccagaacattccgtt
gaagctgaaggagaaaatgatgatgctgacgatgaagatggcgatgatgcttcagagggt
ggtgaggacgcgtcgggaactgaatctattggtgacgaatgttcacaagacggtaacggt
atggaggaagagggcgagcatgatgagattgatggtaaagctgagagtgaaggagaggca
gaggggatggattcgcatcttatagaagaggacaatcggttgcttccattgtcagaacgt
gttctattatccgttaagcctctttcaaagcatgtagccgcagcagcgttgcttgatgag
agacaaaaagattccagagtgttctacgggaatgacgacttttatgttcttttcaggctt
catcgaaccctgtacgagagaattttgtctgcaaaaacatattgcacaggcagtgaactg
aatcggagaaacacgaaagatactagttcacctgatccttatgcaaggtttatgagtgct
ctgtttagtctgcttaatggctcagctgaaagttccaagtttgaggatgaatgtcgagct
attattggaaaccaatcatatgttttattcacgttggaaaaactgatatacaaactagtt
aaacagcttcaagctgttgtagcagacgatatggataataagcttctccagttgtatgag
tatgagaagtctcggaaacctgggagggtcattgactcggtgtattatgaaaacgcgagg
attctccttcacgaggaaaatatttatcggttggaatgttcgtcctctccatcccgtttg
tcaatccagcttatggatagtataatcgaaaagcctgaggcttatgcagtctccatggat
cccacgtttgcaagttatctgcaaaaggagttcctttccaactcatcagggaaaaaagta
gccccacaggccattgtgttaaaaaggaacatgcgtggatactctggtctggatgatctt
gcagtcgcctgcaaggcaatggaaggtgtagaagtaattaatggccttgagtgcaagatg
tcttgctcttcctacaagatctcgtatgtcttggacacggaggatttcttccataggaag
aagaagaagcagaagaagccgtcacatgaaaaatcatcatcggagcaacgcaagttgtac
agagtagaaagattccacaagtttctctcagcttcaagatga
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