KEGG   Brassica napus (rape): 111204634
Entry
111204634         CDS       T04128                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111204634
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    111204634
   03036 Chromosome and associated proteins [BR:bna03036]
    111204634
Spliceosome [BR:bna03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111204634
 Complex B
    111204634
 Complex C
   U2 SnRNP specific factors
    111204634
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111204634
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_2 Htt_N-HEAT_1 HEAT_EF3_N XMAP215_CLASP_TOG Adaptin_N
Other DBs
NCBI-GeneID: 111204634
NCBI-ProteinID: XP_022555493
LinkDB
Position
C3:complement(39463062..39467236)
AA seq 1215 aa
MANIDPEIAKTQEERRKLEAEREGVSLTFVTLDRDLYGGNERDSYSTSIAPNDEEDPNLD
THGSLVAQRLASFTAPKSILNEVARLHSEDDDDDGGFKPRQTIAEREGEYRNRRLNRVLS
PDRVDPFAMGEKTPDPSVRTYNDHMRETAVQREREETLRLIAKKKKVAEEAAKKQKDSAH
SKKRNRWEQDGGAETSSKKAKASDSVWDATPGRVSVGRRNRWDEPTPGRVTDSDATPSGV
TWDSTPKGYATPTPKRQRSRWDETPATMGSATYTPGFTPFQINLLGAMTPDQYNQARWEK
EIEERNKPMSDEELDAMFPKGYKVLNQPASYVPIRSPARKVIGTPTPMTTPGYIIPEENR
GQQYDVPPELPGGLPFMKPEDYQYFGALLNEEKEEELSPDEQKERKIMALLLKVKNGTPA
QRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPY
VHKILVVIEPLLIDDDYYARAEGREIISNLSKAAGLATMIAAMRPDIDNADEYVRNTTAR
AFAVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLNSLVELI
EHGLSDENLKVRTITSLSLAALAEASAPYGIESFDSVLIPLWKGIRSHRGKVLAAFLKAI
GFIIPLMDAGYARYFTKEVMVILIREFQSPDEEMRNIVLKVVKQCASTEGVEADYIRSDV
LPEFFKHLWVKRMALDKRNYKSLVETTVEIANKVGVADIVERLVNGLKDESELYRRMVME
AIDKVVTNLGASDIVARSEELLIDGILYAFQEQTNDDANVMLNGFGAVVNGLGQRVKPYL
PQICGTIKWRLTYKSANVRQQAADLISRIAVVMKQCGEEQLMGHLSVVLYEYLGEEYPEV
LGSVLGASKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEF
VPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLRVQERQNR
VCTTVAIAIVAETCSPFTVLPALVNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAV
TPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNLIWPNIFETSPHVINA
VMEAIEGMRVALGGAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVASYPVFEN
EQTNIYSRPELTMSL
NT seq 3648 nt   +upstreamnt  +downstreamnt
atggcgaatatagaccccgagatcgccaaaactcaagaagagagacggaagttagaagca
gaacgcgagggagtttccctcacgtttgtgactctcgatcgtgatctctacggaggcaac
gaacgtgattcctactcgacttccatcgcaccaaacgacgaggaggatcccaatctcgac
acccacgggtcgcttgtggctcagcgtctcgcctccttcaccgctcccaagtctatcctc
aacgaggtggctcgtcttcacagcgaagatgatgatgacgacggtggattcaagccgaga
cagactatcgcggagcgcgagggtgagtaccggaacaggagacttaatcgggttctctct
ccggatagagttgatccgtttgctatgggagagaagacgcctgatccgagtgttagaact
tataatgatcatatgagggagacggctgtgcagagggagagggaggaaaccttgaggctt
attgctaagaagaagaaggttgcggaagaagctgccaagaaacagaaagattctgctcat
tccaagaagaggaacaggtgggagcaagacggtggtgctgaaacctcttcaaagaaagct
aaagcatcagattctgtttgggatgcaactccagggagagtttctgttggaagaaggaac
agatgggatgagcccacacctggtcgtgtgactgattccgatgcaactccttcaggtgtt
acttgggactcgactcccaaaggttatgcaactccaaccccgaagcgtcagcgttctagg
tgggacgagacaccagccactatggggagtgctacttacacccctggtttcactccattt
cagattaatctgcttggtgctatgacaccggatcagtacaatcaggcgaggtgggagaag
gaaattgaagagagaaacaagccaatgagtgatgaagagcttgacgccatgtttcctaaa
ggatacaaggttttgaaccagcctgcttcttatgttcccattcgatcccctgctaggaag
gttataggaaccccgacacccatgacaactcctggctacattattcccgaggaaaaccgc
gggcagcagtacgatgttcccccggaacttcccggtgggctgccgtttatgaaaccagag
gattatcagtatttcggagcgctcttgaatgaagagaaggaagaagaactgtctcctgat
gagcagaaagaacgcaagataatggcactgttgctgaaggtgaaaaacggaacgcctgca
cagaggaaaacagctttgaggcagcttactgataaggcccgtgagtttggcgctggtcct
ttgtttaataaaatcttgcccttgctcatgcaacccactttggaagatcaagagaggcat
cttttggtgaaagtgattgataggattctgtacaaacttgatgagcttgtacggccctac
gtccacaagattctcgttgttattgagcctttgttgatcgatgacgattattatgcccgt
gcagaagggagagaaattatctctaaccttagcaaagcagctggtttagccaccatgatt
gcagctatgcgtccggatattgataacgctgatgaatacgtgaggaacacaacagcgaga
gctttcgctgtggtcgcttcggcgcttggaatccctgcactattgccgttcctgaaagct
gtttgccagagtaagaagtcatggcaggcacgacacactggaatcaagattgtgcagcag
attgccatactaattggctgtgccgttttgcctcacttgaattctctagtagaacttatc
gaacacggtctcagtgatgaaaacctgaaggttaggactattacgtccttgtcactggct
gctctcgccgaggcttctgctccttatggtattgagagcttcgactctgttcttatacct
ctgtggaaaggtattaggtctcaccgtggcaaagtcttggctgcgttcttgaaggcgatt
ggttttatcatccctttgatggatgctgggtatgcgagatactttacaaaagaagtgatg
gtgatcttgattagggagttccagtcgcctgatgaagagatgaggaatattgtactcaag
gtggtgaaacagtgtgcaagtaccgaaggtgttgaagcggattacatccgcagcgatgtt
ctgcctgagtttttcaaacatttgtgggttaagagaatggctctggataaaagaaactat
aagtcgcttgttgaaactactgttgagattgcgaacaaggttggtgttgcggatatcgtg
gaaagattggttaacggacttaaagatgagagtgaattgtaccggcgtatggttatggaa
gccattgacaaggttgtcacaaacttgggagcatcggatattgttgcgagatcggaggag
ctgctcatagatggcattctttatgctttccaagaacagacaaacgacgatgctaatgtg
atgcttaatgggttcggtgctgtagtgaatggacttggtcagcgagtaaagccttacctt
cctcagatctgtggcaccatcaagtggaggttaacctacaagagtgcaaacgtaagacag
caagccgctgatctcatctctagaatcgctgttgttatgaagcagtgcggagaggaacag
ttgatgggacatctcagtgttgtcctgtacgagtatcttggagaagagtaccctgaagtc
ttgggatcagttcttggagcttcaaaagctatcgtcaacgtgattggtatgacaaagatg
acgcctcccattaaggatctgcttccaagactgactccgattttgaagaaccgacacgag
aaagtgcaagagaattgtatcgatcttgttggtaggattgctgatcgtggtgctgagttt
gttccagcaagagaatggatgagaatctgtttcgagcttcttgaaatgctcaaagctcat
aagaaaggtattcgccgtgcaactgtcaacactttcgggtacatcgccaaagccattgga
ccacaagacgtgctagccacgttactgaacaatctcagagtccaagaacgccagaaccgt
gtttgcaccacagtcgcaatcgccatagtcgctgaaacatgctctccgtttaccgtctta
cccgctttggtgaacgagtaccgagtcccagagctcaacgtccaaaacggtgtcctgaaa
tccctctctttcctcttcgagtacattggagaaatggggaaggattacatatacgcagtc
acgccgttgctcgaagacgcgctcatggacagagatttggttcacagacaaaccgcggct
tcagctgttaaacacatggctctaggtgtagctgggttgggttgtgaagacgctttggtt
cacttgcttaacttgatctggcccaacattttcgagacatctcctcacgtcatcaacgct
gtgatggaagccattgaaggaatgagggttgcgttaggtggagcagttatactgaactat
tgtctgcagggtttgtttcacccggctcgcaaagtccgtgaagtgtactggaagatatac
aattcgctttacattggtgctcaggacacgcttgttgcttcttacccggtctttgagaat
gagcagaccaatatttatagccgacccgagttaactatgtccctctga

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