Brassica napus (rape): 111204757
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Entry
111204757 CDS
T04128
Name
(RefSeq) probable pectate lyase 22 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111204757
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111204757
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111204757
NCBI-ProteinID:
XP_022555860
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Position
C3:40391127..40393394
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AA seq
454 aa
AA seq
DB search
MRIKSFKVLVHVLYSLYVSLSFSRSLICFVLKPYNFFSKKPMNTMLNSSHALFSLIFLYC
IFFSSLALSSPVSDPELIVDEVHRKINESISRRNLGYFSCETGNPIDDCWRCDKDWEKNR
KRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPKPGTLRYAVIQDEPLWIIFNRDMT
IQLKEELIMNSFKTLDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSP
EHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVM
LLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANP
TINSQGNRFLAPDDSFSKEVTKHEDAPESEWSHWNWRSEGDLMLNGAFFTLSGAGPTKSS
SYSRASSLAARPSSNVGEITISSGALSCKKGSHC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattaaatcattcaaggtgctcgttcatgtgctatatagcctatatgtttctttg
tctttctcccgttcactcatatgtttcgtactaaaaccttataactttttcagcaagaag
ccaatgaacacaatgttaaattcctcacatgcattattttcacttatctttctctactgc
attttcttctcctcactcgctttgtcctcgccagtttccgaccccgagctcatcgttgac
gaagtccacaggaaaataaacgagtctatatcaagaaggaacttaggatacttttcgtgt
gagaccggtaatccaatcgatgattgttggcgatgcgacaaagactgggagaaaaaccgg
aaacggttagctgattgcggaatcggttttggaaaaaacgcaattggtggtcgcgatggt
gaaatttacgtggtcaccgatccaggtaacgatgatccagtaaaccctaaaccgggaaca
ctaagatacgcagtcattcaagatgaacctctttggatcatattcaaccgagacatgacg
atccaactaaaagaagaactcataatgaactctttcaaaaccctagacggacgaggagcc
tccgtacatatcgctggtgggccgtgtataaccatacaatacgtgacaaacatcatcatc
cacggtttacacatacatgattgtaagcaaggtgggaacacctacgtacgagattctcca
gagcactacgggtggcggacgatatccgacggtgacggtgtttcgattttcggtgggagc
cacgtgtgggttgatcattgctcgttatcgaattgtaacgatgggttgattgatgcgatc
cgtgggtcgacggctataacgatttctaataattatttgacgcatcacaataaggttatg
ttattgggacatagtgatacgtatgaacaagacaagaatatgcaagtcactatcgctttt
aaccattttggagaaggcctcgtccaacgaatgccaaggtgtcgacatggatatttccat
gtggtgaacaacgactatacacattgggaaatgtatgcaattggaggaagtgctaatcct
accatcaactctcaaggcaaccgttttcttgctcctgatgactcttttagcaaagaggta
acaaagcatgaggatgctcccgaaagcgaatggagtcattggaattggagatccgaagga
gatctaatgcttaacggtgcattctttacactttctggagctggaccaactaaatcgtca
agctattcgagagcctcaagcctagctgctagaccgtcttctaatgttggtgagataact
atatcatctggtgcactcagctgcaaaaagggttcccactgctga
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