Brassica napus (rape): 111205227
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Entry
111205227 CDS
T04128
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111205227
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
111205227
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111205227
NCBI-ProteinID:
XP_022556471
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Position
C4:complement(41891680..41893524)
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AA seq
248 aa
AA seq
DB search
MMQTISFVESSRVKVKGLLSLNSQMFHIVINRCRNVKINDIRIVADGKSPNTDGIHVQLS
TDVEIRNASIKTGDDCISIGPGTKNLWVERVTCGPGHGISIGSLGKDREEEGVQNVTVKK
TVFVGTDNGLRIKSWANPSSGFVQRVRFLESLMFNVKFPLIIDQHYCPHNINCPSQESGV
RINDVIYQGIRGTSATKIAVKLDCSAKAPCTRIRMKDISLRYANEAAQSSCVNVLGDALG
LVKHQTCF
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagacaataagttttgtggagtcaagtagagtcaaggtgaagggattattgtca
ttgaacagccaaatgttccacatcgtcattaatcgatgccgtaatgttaagatcaacgat
attcggatcgtggcggatggaaaaagcccgaacacagatggcattcatgtccaactatca
actgatgttgaaattcgtaacgcttccatcaaaactggtgacgactgtatctccattggc
cccggaaccaagaacttgtgggtcgaacgagtcacatgtggccctggtcatggaatcagc
attgggagcttgggaaaagatagagaagaggaaggggtacaaaatgtgacggtgaagaaa
acagtttttgtaggaacagacaatggattaagaattaagtcatgggctaacccatcatcc
ggttttgttcagagggttcgattcttagagtctcttatgttcaatgtcaagtttcctctc
atcattgaccaacactattgccctcataacataaactgtccttctcaggaatcaggagtg
aggataaacgatgtgatatatcaaggcataagaggaacatcagctacaaaaattgcggta
aaattggattgcagtgctaaagctccatgcacacgtattagaatgaaggacattagtctg
agatatgctaatgaagctgcacaatcttcatgtgtcaatgtccttggagatgcacttggt
ttggtcaaacatcaaacctgcttctga
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