Brassica napus (rape): 111208744
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Entry
111208744 CDS
T04128
Name
(RefSeq) zinc finger CCCH domain-containing protein 4-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111208744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
111208744
Spliceosome [BR:
bna03041
]
Complex B
Other components
Prp19-related factors
111208744
Complex C
111208744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH
zf-CCCH_PARP12
RRM_3
RRM_occluded
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
111208744
NCBI-ProteinID:
XP_022563846
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All DBs
Position
C8:complement(2182678..2185534)
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AA seq
478 aa
AA seq
DB search
MAHRILRDHDADGWERSDFPIVCESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQARDTALNISTHDSIPKSDVNREYFAE
EHDRKTRAGLDYESSFGKMRPNDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGEECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDQSIKTLYVGGLNSRIL
EQDLRDQFYAYGEIESIRILADKACAFVTYTAREGAEKAAQELSNRLVVNGQRLKLMWGR
PQAPRPDQDGSNQQGGVAHSGLLPRAVISQQHNQPPPMQQYYMHPPPPNQDKPYYPSMDP
QRMGAVISTQEAGGSSTTENNGGSSSSYMMPTHQLYPPAPYGYMPSPYQQQYPGPMHHHY
APPPAAYQSYPQQPGPESRPAPSAVSAPPPDSAPAGSGAPSGSYQQPPAASTTTDSSQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctcataggattctcagagatcatgacgccgatggatgggagcgctccgatttccca
atcgtctgcgagtcttgcctcggtgataatccctacgtgcgaatgaccaaggcggagtat
gataaggagtgcaagatatgcacacgacctttcacggtgtttaggtggagacctgggcgt
gatgctagatacaagaagacggagatttgtcagacttgctgcaagctgaagaatgtgtgt
caagtctgtcttcttgatcttgagtatggtcttcctgttcaagctagggacactgcgctt
aacattagtactcatgactctatcccaaagagtgatgttaacagagagtacttcgctgag
gagcatgacaggaagactagagctggactggattatgaatcttcatttgggaagatgcgt
cctaatgatacgattttaaagcttcaaagaacaacaccgtactataagaggaatcgagca
catgtttgtagtttcttcataaggggtgagtgtactagaggtgaggaatgtccttaccgg
catgagatgcctgaaacaggagagctttctcagcagaacataaaagaccgttattatggt
gttaatgatccggttgcgatgaagttacttggaaaagctggtgagatgggcactttagaa
tcaccagacgatcaaagcatcaaaacgctttatgtcggtggacttaattcaagaattctc
gagcaggacttacgagatcagttctacgcttatggagagatcgagtccatccgaatcttg
gcagacaaagcatgcgcgttcgtcacatacacagcccgtgaaggagcagagaaggctgcg
caagagctctccaacaggctagtcgtcaatggtcagaggctaaaactcatgtggggaagg
cctcaggctcccagacctgatcaagatggttcgaaccaacagggcggtgtggctcatagt
ggtttgctacctcgagccgttatatctcagcaacataatcaaccgccaccgatgcaacag
tactacatgcacccaccaccacctaaccaagacaagccttattacccgtctatggaccca
cagagaatgggtgcagtcatttcaacccaagaagctggtggttcaagcaccactgagaac
aacggaggttcgtcttcttcttacatgatgcctacgcaccagctatacccgccagcacca
tatggatatatgccatcgccttaccagcagcagtatcctggtcctatgcaccaccactat
gcgccacctccagctgcttaccaatcgtacccacagcaacctggtcctgaatcaagacct
gcaccaagcgcagtctctgctccaccacctgactctgcacctgctggatctggagcacct
tcaggatcctatcaacaacctcctgctgcttctactactactgattcatctcagtag
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