Brassica napus (rape): 111208817
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Entry
111208817 CDS
T04128
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111208817
03015 mRNA surveillance pathway
111208817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
111208817
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111208817
mRNA cycle factors
P-body specific factors
111208817
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
111208817
NCBI-ProteinID:
XP_022564040
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All DBs
Position
C8:complement(13400710..13403929)
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AA seq
489 aa
AA seq
DB search
MKDRSAKRKVVVRHLPPSLSEPDLLSQIDSRFGDSYSWFSFRPGKSNYKTQKHSRAYFGF
KSPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYLE
FLKLIAQPVENLPSAEVQLERREAEQSGASKPAPIVTPLMEFIRQKRATVIGSQGSLDVR
RGGRRSRAVSANKPSSRPLKRNSEKKKYVEKDTSKSVRSSKQDNSSTASVMDSSLPGISL
TMESGKKKILLLKKDRDTPVNSPPQPEQQMETILSSTSRQNQKIGDVGGRLIKGMLVRKE
PRPSQSSTLVQPEPRVEPSEAENYKRPPRADGIYAGKDYHVSGTNTEKQERRPRNRDRPD
RVVWAPLRRADGSNNSEDQLSSSAANNGEVKQRTLLQRSGEVVNSSDGHSLENGSARYSS
RRVGSRSRKEDGFAVTGEGKSSRRGGGGDPTSYEKQKWILKSSSGYKHQPIPMEFIFGRE
SIDMNGTGK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccggtcagcgaagaggaaggtggttgtacggcacttgccgccttctctttca
gagcccgatctcttatcccaaatcgactctcgtttcggtgatagctacagttggttctcc
tttcgtcctggcaagtccaactataagacgcagaagcattcacgggcctactttggtttc
aagtccccagaagatgtttatgagttcgctgcatttttcaacggccatgtctttgttaat
gaaaagggtgctcagttcaaggccatagttgaatatgcgccttcacagcgtgtgcccaaa
ccatgtgacaagaaagatcctcgtgaaggctctattaccaaagaccctgactaccttgaa
ttccttaagctcattgctcaacctgttgagaatctccccagtgctgaagtccagttggaa
agaagagaagccgagcagtctggtgcttcaaagccggctcctattgttacccctcttatg
gaattcatacgtcaaaaacgtgctactgtgattggatctcagggttcattagatgttcga
agaggaggcagaagatcccgagcagtctcggcaaacaagccaagttcaaggcctttgaaa
cgaaactctgaaaagaagaagtatgttgaaaaggacacttcaaaaagcgtccgcagttcc
aagcaagataattcatctacagcctctgtcatggatagctctctcccagggatttcattg
actatggagtctgggaagaaaaagattttgctcctgaaaaaagaccgagacactcctgtt
aactctccaccacaaccagaacagcagatggaaactattctatcctcgacctcaagacag
aaccagaagattggtgatgttggtgggagattgatcaagggaatgcttgtgagaaaggag
ccgcgacctagccagtcttcaactttggtccagcctgagccaagagtggaaccctcagaa
gcagaaaactacaagcgtcctcctcgagcagatggtatatatgcagggaaagactatcat
gtttctggtaccaacactgagaagcaagagaggcgtcctagaaacagggacagacctgat
cgtgttgtgtgggctcctctccgtcgcgctgacgggtccaataacagcgaggaccaactg
tcatcttcagcagcaaacaatggagaagtgaaacaaaggacgttgttgcaaagatctgga
gaagttgtgaactcctctgatggacactctcttgagaatggttcagctagatattctagt
cgccgtgttggatctcgcagcagaaaagaagacggctttgcagtgaccggtgagggtaaa
tcatcgcgtagaggaggtggtggtgatcccacttcatatgagaagcaaaagtggatctta
aaatcatcatcgggctataaacatcagccaattccaatggaatttatctttggacgggaa
tctatagatatgaatggaactggaaagtaa
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