Brassica napus (rape): 111211070
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Entry
111211070 CDS
T04128
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111211070
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111211070
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111211070
NCBI-ProteinID:
XP_013676223
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Position
C8:46023491..46025778
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AA seq
452 aa
AA seq
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MAATFLNIGGYTLVFLSVILVPHVQANVAIFDNYWTQRQGDALKQTIASYDPNPLNVTDH
LNYHVALAVDATESTNNTRRELIGLETQEGSGKCIAYNPIDKCWRCDPNWEENRKKLVEC
VLGFGRKTTGGKDGPIYVVNDSSDDDLVNPKPGTLRHAVTRDGPLWIIFANSMVIKLQQE
LMITSNKTIDGRGARVYIMEGAGLTLQFVNNVIINNIYVKHIIPGNGGLIRDSEEHVGLR
TKSDGDGISLFGATNVWIDHVSMTRCTDGMIDAIEGSTAVTISNSHFTDHQEVMLFGAKD
EHVIDKNMQITVAFNHFGKRLEQRMPRCRFGTIHVVNNDYTHWEMYAIGGNMNPTIISQG
NRFIAPPNEQAKEVTKREYTSYTDWKSWNWQSEGDYFLNGAYFVQSGRPNAWSPKPKNPV
PSKFAIRPKPGTMVRELTMDAGVLGCEPGKAC
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgtttttgaatattggcggctacactctagtcttcttatcagtcatattg
gtcccacatgttcaagccaatgttgctatcttcgacaactactggacgcagcgtcaaggc
gatgcgttgaaacaaaccatagcctcttacgaccctaatccgcttaacgtcaccgaccac
ttgaattaccatgtcgctttagcagtggacgccacggaatcaaccaacaacacgaggaga
gagctaattggtctggaaacgcaagagggaagtggaaaatgcatagcttataaccccata
gacaaatgctggcgatgtgaccctaactgggaggagaaccggaagaaactagtggagtgc
gtcctcggattcggccggaaaaccaccggaggaaaagacgggcctatctacgtcgtcaac
gactcctcagacgacgatcttgtcaaccctaagccaggtacgttaaggcacgctgtgacc
agagacggaccgctttggatcatattcgcaaacagcatggtcataaagcttcaacaagaa
ctgatgataacgagcaacaaaacgattgatggaagaggagcaagggtttatatcatggaa
ggtgctggattaacgctgcagtttgtgaataatgtgatcataaacaatatttatgtcaag
cacattattcctgggaacggtggcttgatcagagactctgaggaacatgtagggctcagg
acaaaaagtgatggtgatggaatcagtttgtttggggcgactaatgtttggatcgatcat
gtctcgatgacgagatgtacagatggtatgatcgatgctattgaaggatcaactgcagtt
actatttccaacagccatttcaccgaccaccaagaggtgatgctttttggggcgaaagac
gaacacgtgattgacaagaacatgcagataacagtagcgtttaaccactttggtaagaga
ctggaacagagaatgcctcgttgcagattcggaacgatccatgtggtgaacaatgactac
acacattgggaaatgtatgcaattggtggaaacatgaaccctacaataattagccagggc
aaccgtttcatcgctcctcctaacgaacaagctaaggaggttacaaagagagagtacacg
tcttacactgattggaaaagttggaactggcaatcagaaggagattacttcctaaatgga
gcttattttgtacaatccggaagaccaaatgcatggagccctaaaccgaaaaaccctgtc
ccaagcaagtttgccattcgaccaaaaccgggaacaatggtgcgtgaactcaccatggac
gcaggagtacttggctgcgaaccgggtaaagcctgttga
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