Brassica napus (rape): 111211421
Help
Entry
111211421 CDS
T04128
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111211421
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111211421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
111211421
NCBI-ProteinID:
XP_022568216
LinkDB
All DBs
Position
C9:complement(58064411..58066774)
Genome browser
AA seq
499 aa
AA seq
DB search
MEIARLLKLMCVFCIAGLIPTIRANISELDEYWSQRADEAREFTLQAYHSDPYEIVDHFH
ERHYDNSTDDTTTEEHSSNSADVTATAEDSSNSTDVTATEEDSSTKPEEERTEVIEMVGN
SKNSTRRSLKGKGKGKWSKLKGPCTASNPIDKCWRCRSNWANRRKKLAKCVRGFGHGTTG
GKRGRIYVVTSNLDEDMVNPIPGTLRHAVIQKEPLWIIFKNDMSIRLSQELLVNSDKTID
ARGADVHIAHGAGITMQFVRNVIIHGLHIHHISESNGGMIRDSVDHFGMRTRADGDGLSI
YGSSNIWIDHVSMSKCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNNMNEADQKMQ
VTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHL
PYYKEVTKRDYALEDEWKHWTWRSEKDIFMNGAFFRQSGDPHYKSAHTRKQMIKPKNGYA
VSKLTKYAGALDCRVGKRC
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggagatagctaggttgttaaagttgatgtgtgtgttctgtattgctggtctgattccg
accataagagccaacatttcggagttggacgagtattggtcacaacgagccgacgaagcc
cgagagttcactcttcaagcttatcattctgatccttacgaaatcgtcgatcactttcat
gaacgtcactacgacaactctactgatgataccacgacagaggaacatagcagcaactct
gctgatgttacagctacagcggaagatagcagcaactctactgatgttacagcgacagag
gaagatagcagcacgaagcctgaagaggagcgaactgaggtcattgaaatggtcggaaac
tcgaagaacagcactagacgaagcttaaaaggtaaaggcaaaggaaaatggagtaagctt
aagggaccgtgtaccgcaagtaacccgatagataaatgctggcgttgccgttcgaattgg
gctaatcgtcgtaagaagcttgctaaatgtgtccgcgggttcggccacgggacgaccggt
gggaaacgtggacgtatctacgtggttacaagcaacctcgacgaggacatggtgaaccct
ataccagggacattgcgtcacgccgtgattcaaaaggaacctctctggattattttcaag
aacgacatgagcattcgtttaagccaagagcttttggttaatagcgacaagacgatcgat
gcacgtggagctgatgtccatatcgcgcatggcgcagggataacgatgcagtttgtgaga
aatgttattatccatggactgcacattcaccacatttccgagagtaatggtggtatgatc
cgagactcggtagaccattttggaatgaggactagagccgatggtgacggtctatctata
tacggttcgtctaacatatggattgaccatgtttcgatgtcgaaatgtcaagatggactc
attgatgccattgttggatccactgccattacaatctccaactctcacttcactcaccac
aacgacgtgatgctgcttggtgcgcaaaacaatatgaatgaagcggaccagaagatgcaa
gtcacagtggcttataaccattttggtaaaggacttgtacagaggatgccaaggatccga
tggggatttgttcacgttgtgaacaatgactacactcattgggagctttacgctatcgga
ggtagtcaaggtccgactattctcagccacggaaaccgatttatagctcctccacacttg
ccttattacaaagaggtgacaaagagggattatgctttggaagacgagtggaaacactgg
acatggagatctgagaaagatatattcatgaacggagcttttttcagacaatctggggat
cctcattacaaaagtgctcacacgagaaaacaaatgattaaacctaaaaatggatatgct
gtttctaagctgaccaaatacgcaggagcacttgattgcagagtcggtaaacgctgttag
DBGET
integrated database retrieval system
