Brassica napus (rape): 111212233
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Entry
111212233 CDS
T04128
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111212233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
111212233
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111212233
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
111212233
NCBI-ProteinID:
XP_022569406
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Position
C4:28764697..28771269
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AA seq
592 aa
AA seq
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MYKRVSLSFPEEVLEHVFSFINLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT
VIRRFPKLRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMATSYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLSSEVSFSALERLVTRCPSLKSLKLNRAVPLEKLATLLQRAPQLEEF
GTGGYTADVRPDVFSDLSVALSGCKKLKCLSGFWDAAPAYLPAVYSVCCRVTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSDPFVMEANVALT
EQGLVSVSLGCPKLESVLYFCRQMTNDALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGESDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTMRVCQANGHY
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagcgagtgtccttatcgtttccagaagaagttctcgagcacgtattctcgttt
ataaacctagacaaagataggaactcggtgtctctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggaaagtcttcatcgggaactgctacgcggtgagccccgcgacg
gtgatacggaggttcccgaagctgagatccgtggagctgaaagggaaaccgcacttcgcg
gacttcaatttggtgccggagggatggggagggtacgtgtacccgtggatagaggcgatg
gcgacgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagctcatagccaagtcgtttaagaattttaaggttctggtgctttcgtcatgc
gaaggcttctccaccgatggtctagctgctatcgccgcctcttgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgatgtcagtggccactggcttagccatttccca
gacacatacacttctttggtgtctctcaatatctcttgcttatcctctgaggtcagtttc
tctgctctcgaaaggctggtgactaggtgtccctccctcaagtctctcaagcttaaccga
gctgttcctctcgaaaaactggctactttacttcaaagagcgcctcagcttgaggaattt
ggcaccggtggctacactgctgatgtgcgtccagatgtcttctctgatttatctgtagct
ctctctggctgcaagaagttgaagtgcttatctgggttttgggatgctgctcctgcctat
cttcctgctgtttattccgtttgctgtcgggttactactttgaacctgagttatgcgacg
gttcagagttatgatcttgtcaagcttcttagccaatgtcctaaattgcagcgcctctgg
gtgttggactacatcgaggatgctggtcttgaggtgcttgcttcaacctgcaaggacctt
cgcgagctgagagtgtttccgtccgacccttttgtcatggaggcaaacgttgcattgacg
gaacaagggcttgtctcggtctctctggggtgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaacgatgcgctggtaaccattgctaggaatcgtcccaacatgacc
cgcttccgtttgtgcatcatcgagccgaaagcccctgaccatatgactctagagccactg
gatgtgggatttggagccatagtagagcactgcaaagatctccggcggctctccctatcg
gggctgttgaccgacaaggttttcgaatacattgggacatatgcaaagaagatggagatg
ctgtcagtggcgtttgcaggagagagtgacttgggaatgcatcatgtgttgtcagggtgc
gatagtttgaggaagcttgagataagggactgcccgtttggagacaaggcgctattggcc
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcttgttcggtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctcaatgtggaagtcattgatgaa
agaggtccgccggactcgagaccagagagctgccctgttgagagagtgtttatataccga
acagtggcgggtcctcggtttgacatgcctggcttcgtgtggaacatggaccagcaacac
tcaaccatgagggtttgccaggcaaatggtcactactaa
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