Brassica napus (rape): 111212602
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Entry
111212602 CDS
T04128
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111212602
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111212602
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111212602
NCBI-ProteinID:
XP_022569883
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Position
C9:61331566..61333964
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AA seq
378 aa
AA seq
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MVRFLTIALIPILIILFVANVLAATELNVMDKCWRPNPHWRKVRNQLARCSVGFAGKMTG
NIGKGVTQYKVTDPSDDPLNPKPGTLRYAATLIKGKKWITFKRNMKINLHKPLLISSFTT
LDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIMELGQVDGDAI
RLVTAKKVWIDHNTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDKDM
RVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVAPES
GRKEITWKKHSQGDKMQWKFYSVNDYMENGACFGLQKGIGKARPNYGPSQRFTVADAKTV
KELTSSAGALHCTRNSVC
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggttagattcttgaccatcgcgctgattccaatcttgattattttgtttgtggcaaat
gtcttggcagccacggaactgaatgtaatggacaaatgttggagaccaaacccgcattgg
cgtaaagtccgtaatcagctggcacggtgttctgtcggattcgccggtaaaatgactgga
aacatcggtaaaggagtaacacagtacaaagtcaccgacccttctgatgatcctctaaac
cccaaaccaggaaccctaagatatgcagcaactctcatcaaaggcaaaaaatggatcacg
ttcaaaagaaacatgaagatcaacctccacaaaccgctactaatcagcagcttcaccaca
ctcgacggtcgtggtgtcagcgttcacatctccggccccgcatgtctcatagtctacaaa
gccaccgatgtgatcattcatggactcaaaatccatgactgcaaagctcacccaccgagc
tcggtgatgggaccagactcaaagatcatggaacttggacaagtggacggggatgcgatt
aggctagtcacggctaagaaagtgtggatcgaccacaacacgttatatgactgcgaggac
gggctattagacgtcacgagagggagtactgacgtcactgtgtcgaacaattggtttagg
aaccaggacaaggtcatgcttcttggacatgatgatggctatgtgagagacaaagatatg
agagtcactgttgtgtttaaccactttggtcctaactgcaaccagagaatgccacgagtg
agacatggatacgctcacgtggcgaataactattaccaaggatggactcaatacgcgatt
ggaggaagcatgagccctcgcgtgaagagcgaatctaactacttcgtcgcaccagaatcc
ggacgcaaagagataacttggaagaaacatagccaaggtgataaaatgcaatggaaattc
tactcggtgaatgattatatggagaacggagcttgtttcggcctacagaaaggtattgga
aaagcccggcccaattacggcccatctcaaaggttcacagtagcggacgctaagaccgtt
aaagaactcacttcttcagctggagcgttacactgcaccagaaactctgtctgttag
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