Brassica napus (rape): 111212758
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Entry
111212758 CDS
T04128
Name
(RefSeq) probable pectate lyase 9
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111212758
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111212758
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111212758
NCBI-ProteinID:
XP_022570065
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Position
C7:17510312..17513148
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AA seq
447 aa
AA seq
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MASSFQKLTSACFVVLLIFVVCALTATNLRNNQVSLSRKLKTEDSQSFNNSTIAIRREGV
ELNEHAVADPDQVALLQTNEQNITERRKLGFFSCGNGNVIDDCWRCDPNWHMNRKRLADC
GMGFGSNATGGRDGRFYVVTDPTDEDMEFPKSGTLRHAVIQVEPLWIIFKRDMVITLKQE
LIMNSYKTIDARGANVHVANGACITIQGITHVIVHGLHIHDCIRTGNAMVRSSPSHYGMR
SMSDGDAVSIYASSHIWIDHNSLSKCADGLVDVVMGSTAVTISNNHLTHHNEVMLLGNND
LYTQDKNMKVTIAYNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIKSQG
NRYAAPKNRYAKQVTKRVRTEKSEWKKWNWRSEGDMLVNGAFFIQSGEGATANYESASSL
AAKPASMVGSITSTAGALGCRSGKPCY
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcgtttcagaaactgacgagtgcttgtttcgtcgtactcctcatctttgtc
gtatgcgctctcacagcgacgaatctccggaacaaccaagtctctctgtcgaggaagctg
aaaacagaggattcgcagagctttaacaattcaacaattgcgatcaggcgtgaaggtgtg
gagttgaatgaacacgcggttgctgatcccgaccaggttgccctccttcagacgaacgaa
caaaacattaccgaaaggaggaagcttggtttcttctcctgtgggaatggcaatgtaata
gacgattgttggcgttgtgaccctaactggcacatgaaccgtaagcgcctcgccgattgt
gggatgggttttggtagtaacgccactggtggtcgtgacgggcgtttctatgtcgtcact
gatccaaccgacgaagacatggagtttcccaagtcaggtactctacgccacgccgtcatc
caagttgagccactatggattatcttcaaaagagatatggtgataaccttgaaacaagag
ctgattatgaatagttacaagactattgatgctcgcggtgctaatgttcacgtagccaat
ggtgcttgcatcaccattcagggtataacccacgtcatcgttcatggtctgcacattcat
gattgtataagaactgggaacgcaatggtcagaagctcgccttctcattatggaatgagg
agtatgtctgatggtgatgctgtttcaatatatgcgtcaagtcatatctggattgaccac
aactctctctctaagtgtgctgatggtctcgttgatgttgtcatgggttccactgccgtt
accatttccaataaccatctcactcaccacaatgaggtcatgttgctaggaaacaatgat
ttgtacacacaagacaagaatatgaaagtgaccattgcgtataaccattttggcgaggga
cttagacagagaatgccaagatgcaggcatggatatttccatgtggtgaacaacgactac
acgcattgggaaatgtacgctattgggggaagtgcaaacccaactataaaaagtcaaggc
aatagatatgctgctcccaagaaccgctatgcaaaacaggtcacaaaaagggtgaggaca
gagaaaagtgagtggaagaagtggaactggagatcagaaggagacatgctagtgaatgga
gcatttttcatacaatcaggggaaggagcaacagcaaactatgaaagtgcctcgagctta
gcagctaaaccagcttctatggtcggctcaatcacttctactgcaggtgcacttggttgc
cgcagtggcaaaccttgctactaa
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