Brassica napus (rape): 111212934
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Entry
111212934 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3-like 1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
111212934
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
111212934
REST complex
111212934
Heterochromatin formation proteins
Other heterochromatin formation proteins
111212934
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
111212934
NCBI-ProteinID:
XP_022570289
LinkDB
All DBs
Position
A1:30752248..30759201
Genome browser
AA seq
1346 aa
AA seq
DB search
MKRIRDGSGSQFRRTLGSSRGELYGQSPVPGSGDTEEEGRGEGGRIASGDVTSQNVKDAL
SYLQDVKDMFHDQRETYDRFLEVMKDFKALRIDTRGVIARVKELFKGHNHLIYGFNTFLP
KGFEITLIEEDESPPKKTVDFEEAINFVNKIKTRFKHDEHVYKSFLGILNLYRKEKKGIS
EVYNEVSILFEGHSDLLEEFTRFLPASLPSHSAAQHSRSQAQRYNDPRSGPPLIRQMQVE
KEHRRERAVASRSDYSADHNDLCDDKTMVKMQREQRKRADKENRERRGRVLDDREADQDN
LHHFPEIRKSSRRAECPEAYSGSASHSEKDNLKSMYNQAFVFCEKVKERLCSQDDYQTFL
KCLNLFSNGIIQTKELQNMVSDLLGKYPDLMDEFSQFFERCESIDGFQHLAGAMSKKSFS
SEEQASRSMEVEEKEREHKPDLEVVNETEQYKEEYVGKSIQELDLSNCECCTPSYRLLPS
DYPVRTASQRSELGAEVLNDRWVSVTSGSEDYSFKHMRRNPYEEILFRCEDDRFELDMLL
ESVSSAARTAENLLNIITEKKIAFSGSFRIEDHFTALNLRCIERLYGEHGLDVIDILHKN
PATALPVILTRLKQKQDEWXKCRDDFDKIWAKVYAENHYKSLDHRSFYFKQQDSKNSSAK
SLVAEIKELKEKSQNEDDILLSISAGYRQPINPNLDYEYFSRDMHEDLYKLVHFSCEELC
STKEQLSKVLRLWENFLEPVLGVPPRAKGTDPVEDVPKTLDVNHSTSTNEEANGSCGADT
ATLASRKLISVANGDQNASSGASNLGEIGLLNKDSTGKEDLQDADTANGDGVTSSAVKLQ
KEHETGNRADQRSVMPIPMDINERASTSNLSTPSGENNHGVLEKEDLAGSHEIQAKPSST
LSDIHHIKTSPSTQAGDGGKSIALASGIRSDSSTDNMNSDEPECPLTIEKEEGELSPNGD
FDDNVGLHEDLGVKSTSKPENLADAEVENEDENSENASEGGEECSHDENREEESGEHEEV
DSQSLAGDTELLRQSERVLLSARPLSKHVAAVLRDWRTKDIRVFYGNDDFYVLFRLHQIL
YERILSAKRNCSGDELKSKNSKDTDSLDPYARFMKGLYGLLDGSVENTKFEDECRAIFGN
QSYVLFTLNKVIYKLVKQLQAVVADEMDNKLIQLYEYEKSRKPGRVIDSVYYENARVLVH
DENVYRLECSSSPSRLSIQLMDNIVEKPEPYAVSMDPMFASYLQTEFLSTSREKKEEGHN
IVLRRNRRPYSGLDDLAALCKAMEGVEVVNGLECKMSCSSYKVSYVLDTEDFFHRKKKKK
KKIEHISQQRSKDRVERFHRFLSASR
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatacgagacggctccgggtctcaatttcgacgcactttgggctcttctcga
ggcgaattatatggacaatctccggtccctggcagtggtgacactgaagaagaaggaaga
ggagagggagggagaatcgctagtggagacgttacctctcagaatgttaaggatgccttg
tcgtacctccaggatgttaaggacatgtttcatgatcaacgggagacatatgacaggttt
cttgaggttatgaaagattttaaagctctaaggatcgacacacgcggtgtgattgcccga
gttaaggagttgttcaagggtcataaccatttgatatacggttttaataccttcttgcct
aagggatttgaaattacgcttattgaggaagacgaatccccgcctaagaagactgtagat
tttgaagaagctattaattttgtgaataaaattaagacgcgattcaagcacgatgaacac
gtctataaatctttcttgggtatcttgaatttgtaccgaaaggagaagaagggaattagt
gaggtttacaatgaggtatctatcctttttgagggtcactcggatttgcttgaagagttt
actaggtttttgccagcgtctttgccatctcattcagcagcgcagcatagccggagtcag
gcccaacgctacaatgacccaagatcaggccctcccctaattcgtcaaatgcaagtggag
aaggaacaccgacgagaaagggctgttgcttcccgcagtgattatagtgctgatcataat
gacctttgtgatgataaaacgatggtcaagatgcaaagagagcagcggaagcgtgctgat
aaggagaacagagaaaggagaggccgtgttctggacgacagagaagcagatcaagataat
ttgcaccatttcccagagataagaaagtcttcgagaagagcggaatgtcctgaagcatac
tctggttctgcttcgcattctgagaaagacaatttgaaaagtatgtacaaccaagcattt
gttttctgtgagaaagttaaggagagattatgcagccaggatgattatcaaacattcttg
aagtgcctcaatttatttagcaatggaataatccaaacgaaggaactgcagaatatggtt
tctgatcttcttgggaaataccctgatctcatggatgagttcagtcagttctttgagcgt
tgtgaaagtattgatggatttcaacaccttgctggtgctatgagcaaaaaatcatttagt
agcgaagaacaggcatccaggtcaatggaggtggaagaaaaggaaagagaacacaagcct
gacctcgaggttgttaatgaaacagagcaatataaggaggagtacgtgggaaaatctatt
caagagcttgatctatctaattgcgagtgttgcactcctagctaccgactactgccttcg
gattatccggtacgaactgccagtcagaggtcggagctaggagctgaggttttaaatgat
cgctgggtgtctgtcacttcaggaagtgaagattattcttttaagcacatgcgcagaaac
ccatatgaagagatcttgttcagatgcgaagatgatagatttgagttggacatgcttttg
gaatctgtgagctctgcggccagaactgctgaaaatttgttgaacatcatcacagagaag
aaaatagctttctctggctccttcaggatcgaagatcacttcacggccctgaacttaagg
tgtattgagcgactttatggcgagcatggtcttgacgtgatagacatattacataagaat
ccagccactgcacttcctgtaatcttaactcgtttgaagcagaaacaagatgaatggnaa
aaatgccgtgatgattttgataagatctgggcaaaggtatatgcggaaaaccattacaaa
tcacttgatcatcgcagtttctacttcaagcaacaagattcaaagaactcgagtgcaaaa
tcattggtggctgaaattaaggagcttaaagagaagagtcagaatgaggatgatattctg
ctgtctatttctgctggttacaggcaacccataaatcctaatcttgactacgagtatttc
agccgagatatgcatgaagacctgtacaaactagtccatttttcatgcgaggagttatgc
tctacaaaagaacagctcagcaaagttctgaggctttgggaaaatttccttgagccagtg
ctgggcgttcctcccagggccaagggcacagatcctgttgaagatgttcccaagactctt
gatgtgaatcacagcacttcgactaatgaggaggctaatgggagttgtggagcagacaca
gcaacgctagcttccaggaaactaatatctgttgccaacggagatcagaatgcttcgtct
ggggcatccaatcttggtgagattggtttgttaaataaggattcgacagggaaagaagat
cttcaagatgctgatacagccaacggagatggtgttacctcttctgctgtaaaactccaa
aaagaacatgagactggaaatagagctgatcaaagatctgtaatgccgatcccaatggat
atcaacgaaagagcatccacctcgaatttatcaaccccaagtggagaaaacaatcatggt
gtactagaaaaggaagatctggcaggctcacatgagattcaagccaaaccaagcagcact
ttgagtgatattcatcacattaaaacttctccttcgacccaggctggtgatggtggcaaa
tcaatagctttggcaagtggaataagatcagattcttctacggataatatgaattctgat
gaacccgaatgtccgctcacaattgagaaggaggaaggagaactctcacctaatggtgat
ttcgacgacaacgttggtcttcatgaagatcttggggtgaagtccacttctaaaccagaa
aatttagcagatgctgaagtagagaatgaggatgagaatagtgaaaatgcttcagagggt
ggtgaagaatgttcacatgatgaaaatagagaggaggaatctggtgagcatgaggaagtg
gactcgcagagcttagcaggagacactgagctgcttcgccagtccgaacgtgttctgttg
tctgccagacctctttcaaagcatgtagcagcggttttacgcgactggaggactaaagat
atccgagttttctatgggaatgacgacttttatgtcctctttaggcttcatcaaattctt
tatgagaggattttgtctgcgaaaaggaattgctcaggcgatgaactgaaatcgaaaaac
tcaaaggataccgattcgctagatccttatgcgaggtttatgaagggattgtatggtttg
cttgatggatcagttgaaaataccaagtttgaggatgagtgcagagctattttcggaaat
caatcatatgtgttattcacgctgaacaaagtgatatacaaattggttaaacagcttcaa
gctgttgtagctgatgagatggacaacaagctaattcagttgtacgagtatgagaaatcc
cggaaacctggaagggttattgattctgtgtattatgaaaatgcgagggtcctcgttcac
gacgaaaatgtttaccggttggaatgttcatcctcgccatctcgtttatcgatccaactt
atggacaacatagtcgaaaaaccagaaccatatgcagtttctatggatcccatgtttgca
agttacttgcaaactgaatttctttccacctcgcgagagaaaaaagaggagggacataac
attgtgttgcgaaggaaccggcgtccatactcgggcttggatgatcttgcagcactctgt
aaagccatggaaggtgttgaagtagtaaatggcttggagtgcaagatgtcttgctcttct
tacaaggtttcgtacgtgttggacacagaggatttcttccacaggaagaagaagaagaaa
aagaagatcgaacacatatcgcagcagcgtagcaaagatagagtagaaaggttccatagg
tttctctcagcttcaagatga
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