Brassica napus (rape): 111213830
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Entry
111213830 CDS
T04128
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111213830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
111213830
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111213830
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111213830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
PWI
AAA_16
Cas3-like_C_2
Flavi_DEAD
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111213830
NCBI-ProteinID:
XP_048614476
LinkDB
All DBs
Position
C5:36121533..36129038
Genome browser
AA seq
1046 aa
AA seq
DB search
MASNDLKTWVSDKLMVLLGYSQITLVNYVIVKAKQSKSPAELVGVLMDNGFASSGDTRSF
AEEIFARVPHQTASVNLYQQREAEAAMLVRKQQTYALIDDDDDDEDEVVKEKKPSASESK
KSDKGKKRFRKKSGQSDDSDEEVPVREDSRHVRRKVSEDEDDGSESEEERVRDQKEKEEL
EQHIRDRDTARTRKLTEQKLSKKEQEEALRRANALEEDDLNSLRKVSRQEYLRKREQKKL
EELRDEIEDEQYLFADEKLTETELREYRYKRELYDLVKKRTQDEDNVEEYRIPDAYDDQE
GGVDQEKRFAVAVQRYKDLDSREKMDPFAEQEAWEDHQIGKARLKFGSKNKKASDDYQFV
FEDQINFIKESVMAGENYEDGMHPKEAQDAAEKTALEELQEVRKSLPIYGYREQLLQAVE
EHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLG
HEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFG
LVKDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINFTSAPEADYMDA
AIVTVLTIHVREPLGDILVFLTGQEEIETAEEILKQRIRGLGTKIRELIICPIYANLPSE
LQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPI
SKASATQRAGRAGRTSAGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHD
LINFDFMDPPPAEALVKALELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKY
KCSDEIISIAAMLSVGGSIFYRPKDKQVHADNARMNFHTGNIGDHIALLKVYSSWKETNY
STQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEISSNMNELDSVRKSIVAGFFPHTAK
LQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELA
PHYYQRKDVEDDASKKMPKGAGKAAI
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaatgatttgaagacatgggtttcggataagctgatggtgctacttggctat
tctcaaataactcttgttaactatgtcattgtaaaggctaaacaatcaaaatcaccagct
gaacttgttggagtgttgatggataacggatttgcttcttctggtgatactcgttccttt
gcggaagagatttttgctagagttcctcatcaaactgcttctgtgaatctttaccaacaa
cgggaagcagaggcagcaatgctagtgaggaagcaacaaacatatgctcttatagatgat
gacgatgatgatgaagacgaagtggttaaggagaaaaaaccttcagcttctgaatctaaa
aagtcagataagggcaagaaaaggtttagaaagaaaagtgggcagtcagatgacagtgat
gaagaggtgcctgttagagaggacagtagacacgttcgaagaaaggtttctgaagatgag
gatgatggttctgagtcagaagaggaaagagtgcgtgaccaaaaggagaaagaagaactc
gagcagcatataagagatcgtgatactgcacggacacgaaagctaacggagcaaaagttg
tcaaaaaaagagcaagaggaggctcttcgaagagcgaacgctttggaggaggatgattta
aactctttaaggaaagtttcaagacaagaatatttgaggaagagggaacagaagaaactg
gaagaactaagggatgagatagaagatgaacaatatcttttcgcagatgaaaagctcaca
gaaacagagcttcgtgagtatagatacaagagagagctttatgatctggtgaagaaaaga
acacaagatgaagataacgtagaggagtatagaattccagatgcttatgatgatcaagag
gggggtgttgatcaggagaagagatttgctgttgctgtgcaacgatacaaggacctggat
tcaagggagaagatggatccatttgcagagcaagaagcttgggaggaccatcagattgga
aaagcaagactaaaatttggctcaaagaacaaaaaagcctcagacgattatcagtttgtg
ttcgaggaccaaataaattttataaaggaatctgtgatggctggtgaaaattatgaagat
ggtatgcatcctaaagaggctcaagatgcggctgaaaaaacagctttagaagaacttcag
gaggtcagaaaaagcctgccaatttacgggtatcgtgagcagttgcttcaggccgtggaa
gagcatcaggttcttgtcattgtgggagacactggttcaggaaagacaacacaaatacca
caatatctccacgaagctggttacacaaagcgaggaaaggttggttgtacacagccccga
agagttgcagctatgagtgttgctgcccgtgtggctcaagagatgggtgtcaaacttgga
catgaggttggctattccattcgatttgaggattgtacttcagataaaactgttctgaag
tatatgactgatggaatgcttttgcgtgagctgcttggggaaccagatctggccagctac
agtgtcgttattgtagacgaggcgcacgaaagaaccttgtcaaccgatatactgtttgga
ttagttaaggatatagcgcggtttcgaccagatttgaagttgttgatatctagtgcaaca
atggatgccgaaaagttttctgattattttgatacagcgccgatttttagtttcccaggg
agaaggtatccagttgaaattaactttacaagtgcacctgaagctgattacatggacgca
gcaatagttactgtgcttactatccatgtgagggagccgcttggagatatattggtcttc
ttaactggtcaagaggaaattgaaaccgcagaagaaatcttgaagcaaaggataagaggt
ttgggtacaaagatccgtgaattaatcatatgcccgatttacgcaaaccttccaagcgaa
ctccaagcaaagatatttgagccaactccagaaggggcacgtaaagtagtcctagcgaca
aacattgctgaaacatcattgacgattgatggtataaagtatgttgttgatcctggattt
agcaagatgaaatcatataacccgagaacagggatggagtctttgctgattactcctatc
tccaaggcttcagcaactcaacgtgctggacgagctggaagaacaagcgcagggaagtgt
taccgtctgtacacagcgtttaattacaacaacgacttggaggaaaacacggtgccagaa
gtacagaggacgaatcttgcaagtgtggtacttgctttaaagagtcttggaattcatgat
ctcataaactttgatttcatggaccctccacctgctgaagcacttgtgaaggctttagaa
cttctcttcgctctaggtgctctaaataagctcggtgaattgactaaagccggtagaagg
atggcagagtttccccttgatccgatgttatcgaagatgattgttgtttcggacaagtac
aagtgctcagatgagataatatcaattgctgctatgttgtccgttggagggtctatcttc
taccgtcccaaggacaaacaggttcacgctgacaatgcacgaatgaattttcacactgga
aatatcggtgatcatattgctttgctaaaggtttacagctcatggaaggaaacaaactac
tccacacagtggtgctatgagaactacattcaggtacggagcatgaaaagagccagagat
atccgtgaccagttggaaggacttctcgagagagtggaaatagaaatcagctcaaacatg
aacgaattggattcagttagaaagtccattgtagctggctttttcccgcacactgcgaag
ctgcagaagaatggatcatatcgaactgtgaagcatccccagacagtgcacatacatccc
aattcaggcttatctcaggtgttgccaagatgggttgtatatcatgaactagtgctcacc
tccaaggaatatatgcgacaggtaacggagttgaaaccagagtggttgattgagttagct
cctcactactaccagcgcaaggacgttgaagatgatgcatcaaagaaaatgcccaaagga
gctggtaaagctgcgatctaa
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