Brassica napus (rape): 111216220
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Entry
111216220 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111216220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
111216220
03012 Translation factors [BR:
bna03012
]
111216220
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111216220
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111216220
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111216220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
nSTAND3
ATPase
AAA_16
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
111216220
NCBI-ProteinID:
XP_022576263
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All DBs
Position
A6:2613299..2619007
Genome browser
AA seq
1180 aa
AA seq
DB search
MPYYSAIFRGHIKPNAVVGAASMFIHHSSLHLFRTPNLLFSRPSSLVRSLHSQRSRVLSA
KAGRSSLEWRVSNLPYFQKQGYGRIAYNDYESSDESDRDIVGSSQSQQMAGSTLDNIDQW
RFKLTMLLRNREDQEVVSRERKDRRDFDHISAMATRMGLFSRQYSKIIVISKSPLPNYRP
DLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKMMIPEMPRPNSSESLAANYGKYENPET
VMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEFRKTLPAYKEKEALLRAISANQV
IVVSGETGCGKTTQLPQYILESEIEVARGAACSIICTQPRRISAISVSERVAAERGEQIG
ESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLIDRSLKGVTHVVVDEIHERGMNEDFLLI
VLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDFLETTGYR
LTSYNQIDDYGEEKTWKMQKQAQFTKRKSQISSAVEGALEAADFKGYQFRTRDSLSCWSP
DSMGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKKQLEAHHLLGDPNKVLLLACHG
SMASSEQRLIFDRPPEGVRKVVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCL
LPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQPELLRTPLQSLCLQIKSL
GLGSISEFLSRALQPPEALSVQNAVDYLKLIGALDDNENLTALGKNLSMLPVEPKLGKML
ILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESARSKFSGRDCSDHLTLIRAYSGW
KEAERTRSGNEYCWQNFLSAQTLKAMDSMRKQFFFLLKEASLIDNVESCSKLSYDEHLVR
AIICAGLFPGVCSVVNKEKSITLKTMEDGQVLLYTSSVNGNVQRIPFPWLVFNEKIKVNS
VFLRDSTAVSDSVLLLFGDKVSSGGFDGHLKMLGGYLEFFMKPSLAYTYLSLKRELDELI
QNKLVNPKLDIQLYDKLMTAIRLLVSEDQCEGRFVFGRKALSPTTTKKLKVVGTQLPNSG
GENDKNHLQTVLARAGHGTPVYKTRQLKNNQFRAMVTFNGLDFMGKPCGSKKNAEKDAAH
EALLWLQGESKSSLNDLNHMSTLLKKDKSKKSARAPARWN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactctgcaattttccgaggacacatcaaacctaacgccgtcgtcggtgct
gcctccatgttcatccatcatagctccctccacctctttcggacccctaacttactcttc
agcagaccgtcgtctctagttaggtctcttcattctcagaggtcaagggtcttgtcagcc
aaagcaggtcgttcttcgttggagtggagagtatctaacttaccttactttcaaaagcaa
ggctatggaagaatcgcttacaacgactacgagtcgagcgatgagtcggaccgtgacatc
gtcggctcttctcagtctcagcaaatggcgggttcgactcttgataacattgaccaatgg
aggtttaaacttactatgcttctacggaaccgagaagaccaagaagttgtgtccagggag
aggaaagatcggcgtgattttgatcacatctctgcaatggctactagaatgggattattc
agccgtcagtattcgaagatcattgtcattagcaagtctcccttgccaaactatagacct
gatcttgatgataagcgtcctcagagagaggtggttttgccttttggtctacaaagtgag
gtagatgcccatctgcatgctttcctggatcagaagaaaatgatgattccagagatgccc
aggccaaacagtagtgaaagcttagcagctaattatggaaaatacgagaacccagagacg
gtgatgcagaatagtcttgccagggaaagaatactccgtcccagaagtctgcaactgagg
agcaagcaacagcagtgggtggattctccggaaggccagaaaatggtagagttccgcaaa
acacttcctgcatacaaagagaaagaagcattattaagagctatttcagcaaaccaggtc
atagtggtttctggagaaactggttgtggtaaaacaacacagcttcctcagtacatatta
gaatctgagatcgaggttgcccgtggagctgcatgcagcatcatatgcacacagcctaga
agaatatctgctatttctgtttctgaacgagtcgctgcagaacgtggtgaacaaatagga
gaatccgttggctacaaagtgaggcttgaagggatgagggggagagacacacgtcttctc
ttttgtacaactggtgttttacttagaagactacttatagatcgtagcttgaaaggtgtg
actcatgtcgtagtcgatgaaattcatgaacgtgggatgaatgaagattttctgcttatt
gtcttgaaagatctccttcctcgtcgacctgaccttaagctgattttgatgagtgccact
ttgaacgctgagctcttttcttcttattttggtggtgcaccagccatgcatatcccagga
tttacataccctgtccgagcccatttcttggaggattttcttgagactactgggtacagg
ttgacatcgtataatcaaattgatgattatggtgaggaaaagacatggaagatgcaaaaa
caagctcaattcacaaaaaggaaatcccagatatcctctgctgttgagggtgctcttgaa
gctgcagacttcaagggataccagtttcgtactagagattctttgtcatgctggagccct
gattcgatgggcttcaacctcattgagaatgtgctttgccacatcgtcaaaggagagaga
ccgggtgctgtgttggtatttatgactggttgggatgatattaactccttgaagaaacag
ctcgaagctcatcatcttctaggagaccccaacaaagttttgcttcttgcctgtcacgga
tccatggccagctctgaacagaggctgatttttgatagacctccagaaggagttaggaaa
gtagtgctggccaccaacatggctgagacaagtatcaccatcaatgatgttgtatttgtg
gttgattgtgggaaagcaaaagagacgtcttatgatgcgcttaacaacaccccttgtctg
cttccatcttggatctcgaaggcagctgctcgccaaagaagaggaagagcaggtcgtgtt
atgcctggagagtgttatcacctttatcctagatgcgtctatgatgcttttgctgactac
cagcagccagaactcctgaggactccgttacagtctctatgtctacaaatcaaaagctta
ggacttggaagcatttcagagttcctttccagagcattgcaacctcctgaagctttatca
gtccagaatgctgttgattatctaaagcttattggtgctcttgatgacaacgaaaattta
acagctttagggaagaatttgtcgatgcttcctgtggagcctaaacttggaaaaatgctt
attttaggggctatcttcaattgtcttgatccaataatgacagttgttgctggtcttagt
gtcagagaccccttccttatgccatttgacaaaaaagatctagcagagtcagcgaggtcc
aagttctctggccgtgattgcagtgatcatttgacactgattcgagcgtacagcggttgg
aaagaagctgaaagaacacgttctggtaacgagtattgctggcagaactttctatctgcc
caaactctaaaggccatggactctatgcggaaacaattcttctttctcctcaaggaggct
tctctcattgataacgttgaaagttgcagtaagctgagttatgatgaacatcttgtccgc
gccatcatctgtgctggcctgttccctggagtttgttctgttgttaataaggaaaagtca
attacgctcaagacaatggaggatgggcaagtgcttctatacacgagttctgtgaatggc
aatgtacaaaggattcctttcccttggctagtcttcaacgaaaaaatcaaagtcaattct
gtgtttctccgagactccactgctgtatctgactcagtgcttctattgtttggggataaa
gtatcttcgggtggatttgatggtcatctcaaaatgctgggaggatatctagagtttttc
atgaagccctctttagcatatacatacctttctttaaaaagagagctcgacgagcttatt
cagaataagcttgtgaatccaaaacttgatattcaactgtacgacaaactcatgactgcc
attagattacttgtgtctgaagaccaatgtgagggcaggttcgtcttcggccggaaagct
ctgagccctacaacgacgaagaagttgaaagtagtagggactcagctgcccaacagcggc
ggggaaaacgataagaaccaccttcagacagtgcttgcccgagcaggacacggaacacca
gtgtacaagacaagacagctgaagaacaaccagtttcgggccatggttactttcaacgga
ctggatttcatgggaaagccatgtggtagtaagaaaaacgcagagaaggatgcagctcac
gaggcgttgctgtggttacaaggcgagtcgaagtcgagtttgaatgatcttaaccacatg
tcgacgctcttaaagaaggacaagagtaaaaaatccgcaagggctccagctagatggaat
taa
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