Brassica napus (rape): 111216250
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Entry
111216250 CDS
T04128
Name
(RefSeq) vacuolar sorting protein 18 isoform X2
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
bna
Brassica napus (rape)
Pathway
bna04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111216250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
111216250
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111216250
Hops complex
111216250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf_RING_Vps8
zf-RING_11
Nup54_57_C
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-C3HC4
Beta-prop_VPS8
zf-RING_UBOX
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
111216250
NCBI-ProteinID:
XP_022576407
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Position
A6:complement(4980886..4987597)
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AA seq
988 aa
AA seq
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MDQGRQVFSVDLLERYASKNRGMITCMAAGNDVIVLGTSKGWIIRHDFGVGSSYDIDLSV
GRTGEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHAKWPKPRVLSRLKGLLVNSVAWNR
QQITEVSTKEIILGTQDGQLFEMAVDEKDKREKYIKFLFELEELPEAFMALQMETANINS
GMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGTGIYHGGLNFGAQHSYPNGDENFVESKALLDYSKLSDGTEIVKPSSMALSEYHF
LLLIGNKVKVVNRISEQIIEELQFDITADSASRGIIGLCSDASAGLFYAYDQNSIFQVSV
IDEGRDMWKVYLDLKVFAAALANCRDPLQRDQVYLVQAEAAFADKEYLRAASFYAKINYV
ISFEEVTLKFISINEPEALRTFLLRKLDTLSKDDKCQITMISTWATELYLDKINRLLLED
DTAIENRNSEYHSVIQEFRAFMSDCKDVLDEATTMKLLESYGRVEELVYFANLKEQYEIV
IHHYIQQGEAKKALEVLQKSSVSDELQYKFAPELIMLDAYETVEAWMASKNLNPRRLITA
MMRYSSEPHAKNETHEVIKYLEFCVHSLHNEDPGIHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRTRACVHIYSMMSMHEEAVALALQIDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVKQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDREEECGVCK
RKILTMTGDFRMAQGYSSSGPLAPFYVFPCGHSFHAQCLITHVTSCAHEEQAEHILDLQK
QLTLLGSETRRDMNGNRSDEPITSTTTADKLRSELDDAIASECPFCGELMINEITLPFIK
PEETRHSASWDLRPQTNLANQRTISLPV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaaggcaagtgttttcagttgatctcctcgagagatatgcctcgaagaat
cgtggcatgatcacatgtatggcggctggaaacgatgtgattgttctgggaacaagcaaa
ggatggatcatccgccatgattttggagttgggagttcttatgatattgatctctctgtt
ggtcgaactggggagcaatcgattcacaaggtttttgttgaccctggtggtagccattgc
attgctacggtcactggtgttggaggagctgaaactttttatactcatgctaaatggcct
aagccgcgtgtgttgagccgcttgaagggtttgttggttaactcggtggcttggaacagg
caacagataacagaagtttcaactaaggagatcatcctgggcactcaagatgggcagcta
tttgagatggctgtggatgagaaggataagagagagaagtacatcaagtttttgttcgaa
ctagaagaacttcctgaagccttcatggctttgcagatggaaacagccaacataaacagt
ggaatgaggtactatgtgatggctgtaactcccactcgactctactcgttcaccgggatt
ggaacattagaatctgtttttgctagttataaagaacgtgcagttcattttatggaactt
cctggtgaaataccaaacagtgaactacatttctttataaagcaacgaagagcggtgcat
tttgcgtggctttcaggaacaggaatttatcatgggggcctaaatttcggtgctcagcac
agttacccaaatggtgatgagaattttgtggagagcaaagccctcttggactactcaaag
ctgagtgatggcactgaaatagtcaagcctagttcgatggcactctcagaatatcatttc
ttgcttcttattgggaataaggttaaggttgtgaatcggattagtgaacaaatcattgaa
gagctccagtttgatataacggcagattcagcttcgaggggcataattggactttgcagc
gatgcatctgctggtcttttctatgcgtatgatcagaattcgatcttccaggtttctgta
attgatgaaggcagagatatgtggaaggtttacctagacttgaaagtttttgctgcagct
ttagcaaactgccgtgaccctctccagagagaccaagtttatttagttcaggcagaagct
gcatttgccgacaaggaatatctacgagcagcatcattctatgccaaaatcaattatgta
atatcttttgaagaggtcacgttgaagtttattagtatcaacgaaccggaagctttgaga
accttcctgttgcggaagcttgatactctttcaaaggatgataaatgccaaattacaatg
atatcaacatgggcaactgagctgtatctggacaagataaatcggctgcttttggaagat
gatactgctatagaaaaccgtaactcagagtatcactcagtcattcaagaattccgtgct
ttcatgagcgactgcaaggatgtattagatgaggcaacaaccatgaaacttctggagagt
tatggtcgggttgaagagttggtatattttgcaaacctgaaggagcagtatgaaatcgtt
attcaccattatattcagcaaggggaagcaaagaaagctttggaggtgctccagaaatct
tcagtttcagatgagcttcagtataaatttgcgccagaacttattatgcttgacgcgtat
gaaaccgtggaagcatggatggccagtaaaaatctgaatccaaggagactgattactgca
atgatgcgttactcaagcgaacctcatgcaaagaacgagacacatgaagtcataaaatac
cttgagttttgcgtccatagtttgcataacgaggatccagggattcacaatttacttctc
tcattatatgccaagcaggaagatgacagtgccctcctccgtttcctgcaatgcaaattt
gggaaaggacgagagaacggtcctgaatttttctacgatcccaaatatgcattgcgccta
tgtctcaaggaaaagagaactcgtgcctgtgtccatatatacagtatgatgtctatgcat
gaagaggcggtggcccttgctcttcagattgacccagaacttgctatggctgaggctgat
aaggttgaagatgatgaagacctgagaaagaagctgtggctgatggttgcaaagcatgtc
gtcaaacaggaaaagggagcgaaaagggaaaacataaggaaagctattgcctttctcaag
gaaactgatggccttctaaagattgaagatattttgccattctttccggactttgccttg
atagatgacttcaaggaagcgatttgctcatctctggaggattacaacaagcaaatagaa
caattgaaagaggagatgaacgatgccacacgtggtgcagataatattagaaatgatatt
agtgccctaactcaaagatatgctgtaatcgaccgcgaagaggaatgcggggtttgtaaa
cgtaaaatcttgacgatgaccggggatttcagaatggctcagggatattcatcatctgga
ccactggctcctttctatgtttttccttgtgggcactctttccatgcacagtgcctgatt
acacatgtcacaagctgtgcacacgaagagcaagccgagcatatactcgatctgcagaag
cagctgacattgcttggtagtgaaacccggagggatatgaatggtaatcgatctgatgaa
cctataactagcacaactactgcagacaagcttcgatcagagctagatgatgctatcgcc
agcgaatgcccgttctgtggagaattaatgatcaatgagatcactctgccttttattaaa
cctgaggaaacacgacactctgcttcatgggacctccgaccacagaccaacttagcaaac
cagaggaccatttctttgcctgtttga
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