Brassica napus (rape): 11542107
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Entry
11542107 CDS
T04128
Symbol
rpoC1, BRNAC_p012
Name
(RefSeq) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
11542107 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
11542107 (rpoC1)
03400 DNA repair and recombination proteins [BR:
bna03400
]
11542107 (rpoC1)
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
11542107 (rpoC1)
Transcription machinery [BR:
bna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
11542107 (rpoC1)
DNA repair and recombination proteins [BR:
bna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
11542107 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
11542107
NCBI-ProteinID:
YP_005089943
UniProt:
D1L8M9
LinkDB
All DBs
Position
Pltd:complement(19886..22713)
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AA seq
680 aa
AA seq
DB search
MIDRYKHQQLRIGLVSPQQISAWATKKIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGDEKEDSQFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRR
KDFLVRRMELAKHFIRTNIEPEWMILCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
SNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYMKEPFFCNSYDAIGAYRQKRINLDS
PLWLRWQLDQRVIASKEVPIEVHYESFGNYHEIYAHYLIVRSVKKQTFCIYIRTTVGHIS
FYREIEEAIQGFSQACSYDT
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcggtataaacatcaacaactccgaattggattagtttctcctcagcaaata
agtgcttgggccactaaaaaaatacctaatggagagatagttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaaccggaaaaagatggattattttgtgaaaggatt
tttgggcctataaagagtggaatttgcgcttgtggaaattatcgagtgatcggagatgaa
aaagaagactcgcaattttgtgaacaatgtggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaaactgacatgtcctgtaactcatgtatggtatttgaaa
cgtcttcctagttatattgcgaatcttttagataaacctcttaaagaattagaaggtcta
gtatactgcgatttttcttttgctaggcccataacgaaaaaacctactttcttacgatta
cgaggttcatttgaatatgaaattcaatcctggaaatacagcatcccacttttttttact
actcaaggtttcgatatatttagaaatcgagaaatttctactggggcgggtgctatccga
gaacaattagccgatttagatttgcgaattattatagaaaattcgttggtagaatggaaa
caattaggagaagaaggtcccacggggaatgaatgggaagatcgaaaaattgtaagaaga
aaagattttttagttagacgtatggaattagctaagcattttattcgaacaaatatagaa
ccggaatggatgattttatgtctcttaccggttctgcctcccgagttgagacccatcatt
cagatagaagggggtaaactgatgagttcagatattaatgaactctatagaagagttatc
tatcggaacaatactcttactgatctattaacaacaagtagatctacaccaggggaatta
gtaatgtgtcaggaaaaattggtacaagaagccgtggatacacttcttgataatggaatc
cgtggacaacccatgagggatggtcataataaggtttacaagtcattttcagatgtaatt
gaaggaaaagagggaagatttcgcgagactctgcttggcaaacgggtcgattattcgggg
cgttcggtgattgtcgttggaccctcactttcattacatcgctgtggattgcctcgcgaa
atagcaatagagctcttccagacatttgtaattcgtggtctaattagacaacatctggct
tcgaacataggagttgctaagagtcaaattcgtgaaaaaaagccgattgtctgggaaatc
cttcaagaagttatgcaggggcatcccgtattactgaatagagcacctactctacataga
ttaggcatacagtcattccaacccattttagtggaaggacgcactatttgtttacatcca
ttagtttgtaaggggttcaatgcagactttgatggggatcaaatggctgttcatgtgcct
ttatctttagaagctcaagcagaggctcgtttacttatgttttctcatatgaatctctta
tctccagctattggagatcccatttctgtaccgactcaagatatgctgattggactctat
gtattaacgagcggcactcgtcgaggtatttgtgcaaacagatataatccatgtaatcga
aaaaactatcaaaatgaaagaatttacgaaacaaactataagtatatgaaagaacccttt
ttttgcaattcctatgatgcaattggagcttatcggcagaaaagaatcaatttagatagt
cctttgtggcttcggtggcaattagatcaacgcgttattgcttcaaaagaagttcctatc
gaagttcactatgaatcttttggtaactatcatgagatttatgcacactatctgatagta
agaagtgtaaaaaaacaaactttttgtatatatattcgaaccacagttggtcatatttct
ttttatcgagaaatcgaggaagctatacaaggtttttctcaagcttgttcatatgatacc
taa
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