Brassica napus (rape): 125575678
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Entry
125575678 CDS
T04128
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
KO
K12897
transformer-2 protein
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125575678
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bna01009
]
125575678
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
125575678
Protein phosphatases and associated proteins [BR:
bna01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125575678
Spliceosome [BR:
bna03041
]
Common components
Common spliceosomal components
SR proteins
125575678
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_DEAH11
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125575678
NCBI-ProteinID:
XP_048607252
LinkDB
All DBs
Position
C3:62623604..62625837
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AA seq
233 aa
AA seq
DB search
MADSPNEERDSRSPPPPRKEQPRSRSRSRPRSRSLPRHVSPSRNRGRSRSRSRGRSEIEN
PGTTLYVTGLSTRVTEKDLEAYFSKEGKVASCVLVLEPRTRESRGFAFVTMDSVKDAERC
IKYLNHSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDNDRDSRSSRGRHYDRDDSGH
RRSPPRRDLSPRDHGRRSPRDHGRSSRRDRSYSPRGRSPERRSERRYQPRGSR
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctcccaacgaagaaagggactcacgatctcctcctccaccccgaaaagaa
caaccaagatctaggtccaggtccaggccgaggtcaagatctttgccaaggcatgtatct
ccatcaagaaaccgtggaaggtcgaggtcaagaagccgtggaaggtctgaaattgaaaac
cctggtaccactctctatgtgaccggcttatcaacaagagtcacagaaaaggatcttgaa
gcatatttctccaaggaaggaaaggttgcgtcctgcgttctagtgctggagccgcgcacc
cgcgagtctcgtggttttgcctttgtcacgatggatagtgttaaagacgctgagcggtgc
attaagtatctcaaccattctgtactagaaggccgatacataactgtcgaaaggtcccga
agaaagcgcccgagaactcccaccccaggccactatcttggcttaaaaagctccagagac
aatgaccgagatagccgtagcagtcgagggaggcactacgatcgtgatgattctggacac
cgtaggtcaccaccaagacgcgacttatcacctcgtgatcatggaaggaggtcacctcgt
gatcatggaagaagctctagaagagatcggtcttactctcctcgtggaagaagcccagag
agaaggtccgagagaaggtatcaacctcgtggctcgagatga
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