Brassica napus (rape): 125575693
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Entry
125575693 CDS
T04128
Name
(RefSeq) sister chromatid cohesion protein SCC2-like
KO
K06672
cohesin loading factor subunit SCC2
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
125575693
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
125575693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
INTS1_R4
zf-RING_15
PHD-1st_NSD
PHD_2
API5
Porphobil_deam
zf-HC5HC2H
PHD_4
Motif
Other DBs
NCBI-GeneID:
125575693
NCBI-ProteinID:
XP_048602334
LinkDB
All DBs
Position
C2:complement(2735623..2745412)
Genome browser
AA seq
1842 aa
AA seq
DB search
MSNPTSSSGLGSTSSLTQFGIGLANTAQSDVASHLPLPSLPIFCGAAQPGELKLFDEVAE
GSGYRSLNRAEILSQSRRIAKMLEETDVSYLDLRNEARELNCNSEEPFQLYDQVLRCNPG
AFEYAIPGPTCDPVCTSEEPQQRTSEPSVPVKIQRQADHHLPRSIQPEPVKRVLRSKHVE
NHSWHPEPLINQSPRDDIATHDSRPETITMNDSASKKSTGKKKRKDGAGPGASSVQPDSS
VLQESIVNSFCEMLEDFCGKAEVPGDDRNEAEWSSVPVDEIRVLVTELMTIRSKMLLHVV
PVDILSRLLHTLDHQIHRAEGLSINSEHSDSDSLELVLGALESIHVSLAVMANSDMPKQL
YKEEVIERILEFSRHQMMAVMSAYDPSYRSASKPADNVAFEGDDDDDLDPDMGSASKRRR
TGKSGKVKKSAVNRITGTVNTALQKLCTILGLLKELLLVERLSDSCILQLLKTSVTTFMV
ENIQLLQLKAISLIGGIYNSYPQHRTYVIDELSQLLWKLPSSKRVLRAYHLPDEEQKQIQ
MVTALLIQLVHNSTSLPETLRQASSANAILENPVDVGYLTKCHEAATETCCLFWTRVLGR
LASLKAQDASEIKVMTENIVNDLLTALNLPEYPSVSLILEVLCVILLHNAGLKSKDVSAR
SMAIDLLGIIATRLKQDAVLCSEDRFWTLLESESEGRVDQVGTKDCALCLGKRAGNLLIC
QICPRRFHAGCLGLKEVDIPSRNWHCPFCVYKRQLLVLQSYCKTDTKSGKVESEEDPNMI
TQTEVVQQMLLNYLQDAGSADDAHTFICWFHLCLSYKDVPKSQEKFKYYIARLKAKSIIR
NSGATTSFLTRDAIKKITLALGRNSSFSRGFDKILHMLLASLRENSPIIRAKAMRAVSTI
VEADPEVLCDKRVQLAVEGRFCDSAISVREAALELVGRHIASHPDVGSKYFEKVAERIKD
TGVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDESSIQDLVCKTFYEFWFEEP
PGHHTQFTSDASSIPVEVEKKTKQMVGLLRTTPNHQLLVTIIKRALALDFFPQATKAAGI
NPVALASVRRRCELMCKCLLEKILQVEEMSREGEVQVLPYVLLLHAFCLVDPGLCTPSSD
PTKFVITLQPYLKSQVDSRIGAQLLESIIFIIDSVLPLIRKLPISVTEDLEQDLKHMIVR
HSFLTVVHACVRCLCSVSKLMGKGVSVVEHLLQFFFKRLESQGADNNQIAGRSLFCLGLL
IRHGNSLISTSGSRSFNLSGCLNLFKRHLRMEDFALKVRSLQALGFILIARPEYMLEEDI
GKIIENTLSDEANGRMKMQGLQNMYDYLIDAEKQLGSDKSVDITVNPVEQGGHTVPVAAG
AGDTNICGGIVQLYWDKILGRCLDCDDQIRQIALKIVEVVLRQGLVHPITCVPYLIALET
DPLEANQKLAHHLLMNMHEKYPAFFESRLGDGLQMSFIFMQSISQVYSESNQNPQQKCSG
KNDHTSSSLTQARLGVSRIYKLIRGNRISRNKFMTSIVRKFDNPTWSGSVISFLMYCTET
LALLPFTTPDEPLYLVYSINRVIQVRAGAIESNLKALLHKDSAKTQHGNGTYQQDSTPAN
IHMMDLNTRIQEEHTHWNSYGHSTPIDLNGVVYQDPRDQFISYQTHYGEANVHKMTSSDP
PELSTDDLQKIKVDCLSAIALQLLLKLKRYLKVTYSLNDERCQAYSPTEPLKPGDPLSRQ
NVAFDLSDTRTDLPSTYQDLVLRYQEFKNAMREDTLDYTIYSSNVKRKRPTPRKSSRSAK
KAVAYNDDDDDEDDDDRGWNGGGGRGMTARRLNYSTRNSNRR
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcccaccagcagctccggattgggttcaacttcgagtttgactcagttcggg
atcggtttggctaatacggcgcagtcggatgttgcttctcacttgccgctaccttccctc
cccatattctgcggcgcggctcaacctggcgagctcaagctcttcgatgaggttgccgaa
ggtagtggctacaggtcgttgaatcgcgctgagattctctcgcaatctaggagaatcgcg
aagatgcttgaagaaactgacgtttcttacctggatcttaggaacgaggctagggagctc
aactgtaattctgaggagccttttcagttatatgaccaagttttacgatgcaatcctgga
gcatttgagtatgctatccctggtccgacctgtgatccagtctgtaccagtgaagagcct
caacagagaacttccgagccaagtgttcctgtcaagattcaacgacaggcagatcatcat
ttacctaggagtatccagcctgaacctgtgaaaagggtattacgatcaaaacatgttgaa
aatcatagttggcatcctgaacctttgataaaccagtcaccacgagatgatattgcaact
catgactctcgacctgaaacgatcaccatgaatgattctgcttccaaaaagtcaacgggc
aagaagaaacgtaaagatggcgctggccctggtgcgtcttcagttcagccagattcatct
gtgcttcaagagtccatcgtaaatagcttttgtgagatgctggaggacttctgtggcaaa
gctgaagtccctggtgatgataggaatgaagcagagtggtcgtcagtgcctgttgatgaa
attcgtgttcttgtaactgaattgatgactataaggtcaaaaatgcttttgcatgtggta
cctgttgatattctatcgaggttattgcacactctggatcatcagatacatagggccgaa
ggcttgtccattaatagtgagcattcagattcagattcattggagttggttcttggtgcc
cttgagtcgatccatgtatcgcttgcagtgatggccaacagtgatatgccaaagcagctc
tacaaggaagaggtgattgagagaattctggagttttctaggcatcaaatgatggctgtt
atgtctgcttatgatccatcataccgcagcgcaagtaaacccgcagataatgttgcattt
gaaggggatgatgatgatgatcttgatcctgacatgggctcagccagtaaaaggcggcgc
acaggaaaaagtggcaaagtgaagaagtcggcagtgaacaggatcactggaacagtgaat
accgcactacagaaactttgcactattcttggcttactcaaggagctgttgttggtagaa
aggttgtctgacagttgcattttacaactgttgaagacaagtgtgacaacatttatggtg
gaaaatatccaacttctgcagcttaaagcaattagcttaatcggtggtatatataattca
tatcctcaacaccgaacatatgtgatagatgagttatctcaattgctctggaagctacct
tcctcaaaacgagtgttgagagcctaccatctacctgatgaagaacaaaagcagattcaa
atggtcactgctttgctcattcagttggttcacaacagcacaagccttcctgaaaccctg
agacaggcttccagtgcaaacgccatactggagaatccagttgatgtcggctacctaact
aaatgtcatgaggcggctacagaaacatgttgccttttctggactcgtgtccttggacga
cttgccagtttaaaggctcaggatgcttctgagataaaagtgatgactgagaacattgtt
aatgatctactgactgcattgaatcttcctgaatatccatcagtttctcttattcttgag
gttctctgtgtcatactgctgcacaatgcagggttgaaatcaaaagatgtctctgcccgg
tcaatggccattgacttactaggtataattgctaccaggttgaaacaagatgctgtcctc
tgcagtgaagacagattttggacattactagaatcagaaagtgaaggtagagttgaccaa
gttggcacaaaagattgcgctctttgtttaggtaaaagggctgggaacttattgatctgt
caaatttgtccaaggcggtttcatgctggctgtttgggtttaaaggaagtagacatccca
agtcgaaattggcactgtccgttttgcgtatacaagaggcaacttcttgtactgcagtct
tactgtaagacggacaccaagagtggtaaggttgagtcagaagaagatccaaatatgatt
acacagacagaagttgtgcaacagatgctcctgaattatcttcaggatgctggatctgct
gatgatgcgcatactttcatttgctggtttcatctgtgcctttcgtataaagatgttcca
aaatctcaggaaaaattcaaatattacattgctagattgaaagcaaagtcaataatccgt
aactctggagcaactacgtcgttcttgacaagagatgctataaagaagattactttagct
cttggacgaaatagttccttttccagaggatttgataagattctacacatgctcctggct
agtttaagagagaactctcccattattagggctaaagctatgcgagcagttagtacaatt
gttgaagctgatccagaggtactgtgcgataagcgtgttcagttggctgttgaaggaagg
ttttgtgattctgctatatctgttagagaagcagcacttgaacttgttggtaggcatatt
gcctcacatcctgatgttggttcaaagtattttgagaaggtcgccgagaggattaaagat
actggagtgagtgttcgaaaacgagccataaagatcatacgtgacatgtgtacttcaaat
cccaacttctctgaatttacaagtgcatgtgccgagatattatctcgaatcagtgatgat
gaatctagcatccaggatcttgtatgcaaaactttctatgaattttggtttgaggaacct
ccagggcatcatactcaatttaccagtgatgctagctccattccagtggaagtggaaaag
aaaactaagcaaatggttgggttgttaaggacgactccaaatcaccagcttcttgtaaca
attattaagcgtgccctggcccttgattttttccctcaagcaaccaaagctgctggtatc
aacccagttgcccttgcatcagtacgcaggcgctgtgagctgatgtgcaagtgcttactg
gaaaaaatattgcaggtagaagaaatgagccgtgaaggagaggttcaagtgcttccttat
gtacttcttttgcatgctttctgtctggtggatcctgggctgtgtacaccgtcttcagac
cctactaagtttgttatcaccctacaaccatatctgaagagtcaggttgatagtagaata
ggagcacagttactagagagtattatattcataatcgattctgtcctgcccttgatccgc
aagctgcctattagtgtcactgaagacctggagcaagatctaaagcatatgattgttcgg
cattcatttctaactgttgtccatgcttgcgttaggtgtctctgttctgtgagtaaattg
atgggaaaaggtgttagcgtggtcgagcatcttcttcagttcttttttaagcggttggag
tcccagggggctgataacaaccagattgctgggcggtcccttttttgtcttgggttgctt
attcgccatggtaactctcttattagcacctccggtagtaggagtttcaatctctctggc
tgtctcaatttattcaaacgacacctccgcatggaagattttgctttgaaagtcaggtcc
ctgcaggctttaggtttcattctgattgcacggcctgaatacatgttggaagaagacatt
ggaaaaataatcgagaatacattatcagatgaagcaaacggacgtatgaagatgcaagga
ttacagaacatgtatgattaccttatcgatgcggaaaaacaattgggatcagataaatct
gttgatatcacggttaacccagttgagcaaggtggacatactgtacccgtggccgctggt
gcaggtgacaccaacatttgcggaggtattgtgcagttgtattgggataagatattaggt
agatgcttggactgtgatgatcaaattcgccagattgctctcaagatagtggaagtcgtg
ctacgtcaaggtcttgttcatcctattacatgtgttccttatttgattgccctcgagaca
gatccgctcgaggccaaccaaaagctggcccatcatttactaatgaatatgcatgagaag
tatccggcttttttcgaaagccgtctcggtgacggacttcaaatgtcgtttatcttcatg
caatccatcagccaggtctattcagaatcaaatcaaaatcctcagcagaagtgttcgggg
aagaatgatcatactagtagctctctcacacaagctagacttggagtctctaggatctac
aagcttatccgtggcaacaggatttctcgaaacaaatttatgacttctatcgttcgcaag
tttgataatccaacctggagcggctcggttatatccttcctgatgtattgcactgaaacc
cttgctttacttccattcacaacacctgatgagccgctctatctcgtgtattccataaac
cgagttatacaagtcagggctggtgcaatcgagtcaaatttgaaggctctgttacataaa
gattccgcaaagactcagcatggaaatggaacgtaccaacaagattcgactcctgcaaat
attcacatgatggatttgaacacaagaattcaagaagaacatacgcattggaattcctat
ggccattcgactccaattgatcttaatggagtagtgtaccaagatcccagggatcagttt
atttcatatcaaacccattatggcgaagcaaatgtgcacaagatgacctcatctgatcct
cctgaattatccaccgatgatttgcagaaaattaaggttgattgcttatcagcaatagct
ttacaactacttttgaagctcaagagatacttaaaagtcacgtacagcttaaatgatgaa
cggtgccaagcctattctccaacggaacccttgaagccaggagatcctctgtccagacaa
aacgttgcctttgacctcagcgatacgcgcactgacttaccttcaacctatcaagacttg
gttctgagatatcaggagtttaagaacgcgatgagagaagatacacttgactacaccatt
tactcatcaaacgtcaagagaaaacgcccaacgccaagaaaaagctcaagatctgcaaaa
aaagcagtggcctacaatgatgatgatgatgacgaggatgatgatgacagaggttggaat
ggaggaggaggaaggggtatgactgctcggagactaaattacagcaccagaaatagcaac
agaaggtaa
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integrated database retrieval system
