Brassica napus (rape): 125575706
Help
Entry
125575706 CDS
T04128
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125575706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
125575706
Spliceosome [BR:
bna03041
]
Complex C
Other components
Step II factors
125575706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
125575706
NCBI-ProteinID:
XP_048613918
LinkDB
All DBs
Position
C5:complement(4539325..4541785)
Genome browser
AA seq
568 aa
AA seq
DB search
MDLIQSYDGEDASSSPESSPPRMLKAKSSAPEVDDTALALTVSNASQSKSNPINPTQHAV
VFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIGSFVFDEQYSTFQKYGYA
ADPSGMNYVGDAEALKQNDGVSVYNIKQSDQKRRKLEESKGEGKREEEVEAEAENPATEA
WLLKNRKSPWSRKKEVVQGELTEEQKKYAEDHAKKKEEKSQQGEAKGEPYTDKSTFHGKE
DKDYQGRSWIEAPKDAKANNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLLLSAGMDC
KVKIWDVYNSGKCMRTYMGHGKAVRDICFSNDGTKFLTAGYDKNIKYWDTETGQVISTFS
TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDINSGEITQEYDQHLGAVNTITFVDNNR
RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISVHPNGKWLAAQSLDNQILIYGTR
ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCRVFKTLRCHNG
VCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggatctgattcaatcctacgacggagaagacgcttcttcttcgccggaatcttcacct
cctcgtatgctgaaggcgaaatcatcggccccggaggtagacgacacggcgctcgctctc
acggtatccaacgcgagccagtcgaaatcgaacccgatcaacccgacgcagcacgccgtc
gtgttcaaccccacctacgatcagctctgggccccgatctacggcccggcccatccctac
gcgaaggacgggatcgcgcaggggatgcggaaccacaagctagggttcgtggaggacgcc
tcgatcgggtccttcgtcttcgacgagcagtacagcacgttccagaagtacggctacgcg
gcggatccctccgggatgaactacgtcggcgacgcggaggcgctgaagcagaatgacggc
gtttcggtttataacatcaagcagagcgaccagaagaggaggaagcttgaggagagcaaa
ggggaggggaaacgggaggaggaggttgaggcggaggctgagaatccggcgacggaggcg
tggctgttgaagaataggaagagtccttggtcgaggaagaaggaggttgttcagggagag
ttgactgaggagcagaagaagtatgcggaggaccacgccaagaagaaggaagagaagagc
caacagggagaagctaaaggagagccttacacggataagagcactttccacggcaaggag
gataaagattatcaagggaggtcgtggatcgaagctcctaaagacgcaaaggctaacaac
gaccattgctacatcccaaagcgtttggttcatacgtggagtggtcacacgaaaggtgtt
tccgctattcggttcttcccaaagcatgggcatttgcttctctctgcaggtatggattgc
aaggtcaagatttgggatgtgtataactctggtaagtgtatgaggacttacatgggtcac
ggtaaagctgtgagggatatttgcttctctaacgatgggactaagttcttgactgctggg
tatgataagaacattaagtattgggacacagagactggtcaagttatatccactttctct
actgggaagattccctatgtggttaagctgaatcctgatgatgacaagcagaatattttg
ttggcggggatgagcgataagaagatagtgcagtgggatattaactccggggagattacg
caagagtatgatcagcacttgggtgcggttaacacaatcacgtttgtggacaacaacaga
aggtttgtcacttcaagtgatgataagtccctccgtgtgtgggagtttgggataccggtg
gttatcaagtatatcagcgagcctcatatgcactccatgcccgccatttctgttcacccg
aatgggaagtggcttgcggcgcagagcttggacaaccagattctgatctacggcaccagg
gaaaggtttcagctgaataagaagaagaggtttgcagggcacattgtcgccggttatgct
tgccaagttaatttctccccggatgggcggtttgtaatgtcgggagatggagagggtagg
tgctggttttgggactggaagagctgcagagtattcaagactcttagatgtcacaacgga
gtatgtattggagccgagtggcatcctctggaacagagcaaagtcgcaacttgtggatgg
gacggcttgattaagtactgggactaa
DBGET
integrated database retrieval system
