Brassica napus (rape): 125576397
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Entry
125576397 CDS
T04128
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125576397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125576397
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125576397
mRNA degradation factors
5'-3' decay
Decapping complex
125576397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
125576397
NCBI-ProteinID:
XP_048592362
LinkDB
All DBs
AA seq
754 aa
AA seq
DB search
MDTNQAPGTDDLNKVADNPSGDSMFDASQYAFFGNDVVEEVELGGLEEEDEILSLNGIGE
GFSFGKEEVEDSRPLSDVDDLATTFSKLNRDPEVNRNTGPVIDRRPRQNSLAPDWTYRAE
IPDWYGQQLLDSDAIKDDKAWSGQPFSALDPKRTTQHPEPQRQLHQNHNQQQFPSDPILV
PKSSFVSYPPPSSISPEQRLGHPNVVPYHSGGAQMGSPNFSQFSTVQPQLAGMHQFRPDL
PLNNRPPAQWMNNALLQQPSHQNGLMPPQLQGSQNRLQHPMQPQLFNPHLSRSSSSGSYD
GMLGFVDPREARPGSAQGNRQNMRFHQQGFDGGVQRRNSGWPPYRSKYMSAGELENILRA
QLAATHSNDPYVDDYYHQACLAKNSAGGKLRHHFCPNHLRDLLHPRARTNNEPHAFLQVD
ALGRVPFSSIRRPRPLLEMDPPNSAKSGDSDNKATDKPLDEEPMLAARVCIEDGLNLLLD
VDDIDRFLQFSQLHDGGNQLKQKRHALLESLAVSLQLFDPLAKNGQSRSQDDFIFQRIIS
LPKGRKLLVRYLQLIFPGSDLMRIVCMGIFRHLRSLFGTISPDPDIAKTTNKLANVVNSC
IHKMELGPISACLAAVSCSSEQPPLRPLGTPVGDGASTVLKSTLDRASELLRGNNFNTAG
MALWRASFNEFYNLLMRYCISKYDGIMQSLNSQLPPEFAGEISDAAAQAIVREMPIELLR
SSFPHIDEQQKRLLMEFLKRSMLGSQKTEQPVLS
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggatactaatcaagctcctggaaccgacgatcttaataaagttgcagataatccttca
ggtgattcaatgtttgatgcatctcagtatgcgttttttgggaacgatgttgtggaggag
gttgagcttggtggattggaagaggaagatgagattctgtctctcaatgggataggggaa
ggcttttcatttggcaaggaagaggttgaagattctagacctctgtcggacgttgatgat
cttgctactactttctcaaagttgaatagggatcctgaggtcaatagaaacacgggacca
gtcattgataggcgaccgagacagaattctttagcacctgactggacttatagggcggag
ataccagattggtatggccagcagttactggactctgatgccattaaagatgacaaggct
tggtcgggacaacctttctctgctctggaccctaaaagaacaacacaacatcccgaacca
caacgtcagctgcatcaaaaccacaatcaacaacagtttcccagtgatcctattcttgtc
ccgaagtcatcttttgtttcataccctcctccaagcagcatatcaccagaacagcgttta
ggacacccaaatgttgtaccatatcattctggtggggctcaaatgggatcgccaaacttt
tctcagttctcaactgtgcagcctcagttggctggcatgcatcagtttcgtccagatctt
cccctgaataaccgccctccggctcaatggatgaataacgcgttgctacaacagccgtct
catcaaaacggtttgatgccccctcagttgcagggatctcagaataggttacaacatcca
atgcagcctcagttatttaatcctcatctttctcgatcatcatcctctggaagttatgat
ggaatgcttgggtttgttgatccgagggaagcaagaccagggtcggctcaaggcaacaga
cagaacatgcgttttcatcaacaaggctttgatggtggcgttcagaggagaaatagcgga
tggcctccataccggtccaaatatatgtcagcaggcgagttagagaatatattgagagcg
cagcttgctgccacacacagcaatgatccttacgttgatgactactaccatcaagcatgc
cttgcgaagaattctgcaggtgggaaactgagacatcatttctgtccaaatcatttgagg
gacctgctccatccacgtgcacggacaaacaacgagccccatgcgtttcttcaggttgat
gctcttggtagagttcctttctcttcgatccgcaggcctcggccccttcttgaaatggac
cctccaaactcagctaaatctggtgattcggataacaaagctaccgataagccccttgat
gaagaacctatgcttgcagctagagtgtgcattgaggacggtcttaacctcctcctcgat
gtcgatgacattgatcgtttcctacagtttagccagctccacgacggaggaaaccagttg
aaacaaaaacggcacgctttgctggaaagcctcgccgtttcgctgcagctctttgatccc
ctagccaagaatgggcaaagcaggtcccaggatgatttcatcttccaaaggatcatctct
cttccaaagggtcggaagctactcgtaaggtatcttcagcttatcttccctggcagcgac
ctaatgaggatagtctgcatgggcattttccgtcacttgagatcactctttggaaccatc
tcacccgatcctgatatcgccaaaaccacaaacaagctcgcaaacgttgtgaactcgtgc
atccacaagatggagttgggacccataagcgcgtgcctagcagcggtctcctgctcttcc
gagcagccaccgctccgtcctttaggcactcctgttggagacggagcttccacggtgctg
aaatctacgctcgacagggcttcagagcttctccggggtaataacttcaacaccgcgggc
atggctctgtggcgtgcttccttcaacgagttctacaaccttctgatgaggtattgcatc
agcaaatacgacggtatcatgcagagtttgaattcgcagttgcctccagagtttgcgggt
gagatatctgacgcagctgcgcaagccattgtccgcgaaatgcctattgagcttctgcgt
tcgagtttcccacatattgatgagcagcagaagaggttactgatggagtttttgaaacga
tctatgctcggaagccagaaaacagagcagccagtcctaagctga
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