Brassica napus (rape): 125577203
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Entry
125577203 CDS
T04128
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125577203
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125577203
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
125577203
NCBI-ProteinID:
XP_048594287
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Position
A8:22641063..22643683
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AA seq
398 aa
AA seq
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MTKSNITLPLFFTLLFALLTFIDVSTGAANVFNVVSFGAKPDGVTDSTGAFLKAWQAACG
SVAAATVMVPIGTFMVKGITFGGPCKSRLKFQLAGTVVAPPDYRAFGNSGYWILFNKVSK
ISLIGGTFDARANGFWACRKSGQSCPPGVRSITFNSGKDVIISGVKSMNSQVTHMTLNGC
TNVAVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGAGTRNFLISKLAC
GPGHGVSIGSLAKELNEDGVENVTLSSSVFTGTQNGVRIKSWARPSNGFVKNVFFQNLIM
KNVQNPIIIDQNYCPSHKGCPTEHSGVKISQVTYKNIQGTSATQQAMKLVCSQSNPCTGI
TLQDIKLTYKKGTPATSYCFNALGTSLGVIQPTSCLNR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatcaaatattacattaccacttttcttcacacttctcttcgcactcctcacc
ttcatcgatgtctcgaccggcgccgccaacgtattcaacgtcgttagcttcggggccaaa
ccggacggtgtgacggattcaacgggagcattcctcaaagcatggcaggcggcttgtggc
tcagtagctgcagccactgtgatggttccaattgggacatttatggtgaagggaataacg
tttggagggccatgcaagagcaggctcaagtttcaactggctggaaccgtcgttgctccg
ccagattacagggcatttggtaactccggctattggattcttttcaataaggttagcaaa
atctcacttatcggtgggacttttgatgctagagctaatgggttctgggcttgccgaaaa
tctggtcagagttgtcctcccggtgttaggtcaataacgtttaactcgggtaaagacgtg
atcataagtggagtcaaatcgatgaacagccaagtcactcatatgactctcaacggttgc
accaatgtggccgtccgtaacgtgaagctagtggctcccgggaatagtccaaacaccgat
ggtttccacgttcaattctccaccggagtcacattcaccggaagcaccgttcagacggga
gatgattgtgttgctattggcgctggtacccggaacttcctcatctccaaacttgcttgt
ggcccaggtcatggtgttagcattgggagcttggcaaaggaattgaacgaagatggagta
gagaatgtgacactatcgagttcggtattcaccggaacacaaaacggcgtgaggataaag
tcgtgggcgaggccaagtaacggattcgttaagaacgtcttcttccagaacctaatcatg
aagaacgtccaaaaccctattataatcgaccaaaactattgtccttcccacaaaggttgc
cctactgagcattcgggtgtgaagataagccaagtgacgtataagaacatacaaggaact
tccgcgacacaacaagcgatgaagctggtatgcagccagagcaatccatgtacaggaatc
acattacaagacattaagcttacttacaaaaaaggaactccagctacgtcctactgtttc
aatgctcttgggactagtctcggtgttattcaacctaccagttgtctaaaccgataa
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